Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq232 387 4e-105 seq97 387 4e-105 seq1 387 4e-105 seq154 217 4e-54 seq301 150 5e-34 seq206 145 2e-32 seq55 118 3e-24 >seq232 Length=115493446 Score = 387 bits (428), Expect = 4e-105 Identities = 421/559 (75%), Gaps = 60/559 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 46640844 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 46640785 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46640784 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 46640725 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 46640724 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 46640665 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 46640664 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 46640605 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 ||| | |||||| | | ||||| || ||||||| Sbjct 46640604 GGAGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 46640545 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 46640544 ACGGCCGGAGCCGGGAGGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCGTC 46640486 Query 326 CC--------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 || |||| ||||| | |||||||||||||||||||||||||| Sbjct 46640485 CCCCCCACGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACA 46640427 Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| |||| | || | | | |||| ||| ||||||||||||||||||||| Sbjct 46640426 GTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCAT 46640367 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 |||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 46640366 TCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACA 46640307 Query 486 AGCATATGACTACTGGCAG 504 |||||||| |||||||||| Sbjct 46640306 AGCATATG-CTACTGGCAG 46640289 Score = 387 bits (428), Expect = 4e-105 Identities = 421/559 (75%), Gaps = 60/559 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 46641477 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 46641418 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46641417 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 46641358 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 46641357 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 46641298 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 46641297 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 46641238 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 ||| | |||||| | | ||||| || ||||||| Sbjct 46641237 GGAGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 46641178 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 46641177 CCGGCCGGAGCCGGGAGGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCGTC 46641119 Query 326 CC--------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 || |||| ||||| | |||||||||||||||||||||||||| Sbjct 46641118 CCCCCCACGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACA 46641060 Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| |||| | || | | | |||| ||| ||||||||||||||||||||| Sbjct 46641059 GTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCAT 46641000 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 |||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 46640999 TCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACA 46640940 Query 486 AGCATATGACTACTGGCAG 504 |||||||| |||||||||| Sbjct 46640939 AGCATATG-CTACTGGCAG 46640922 Score = 387 bits (428), Expect = 4e-105 Identities = 421/559 (75%), Gaps = 60/559 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 46643790 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 46643731 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46643730 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 46643671 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 46643670 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 46643611 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 46643610 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 46643551 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 ||| | |||||| | | ||||| || ||||||| Sbjct 46643550 GGAGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 46643491 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 46643490 CCGGCCGGAGCCGGGAGGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCGTC 46643432 Query 326 CC--------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 || |||| ||||| | |||||||||||||||||||||||||| Sbjct 46643431 CCCCCCACGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACA 46643373 Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| |||| | || | | | |||| ||| ||||||||||||||||||||| Sbjct 46643372 GTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCAT 46643313 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 |||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 46643312 TCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACA 46643253 Query 486 AGCATATGACTACTGGCAG 504 |||||||| |||||||||| Sbjct 46643252 AGCATATG-CTACTGGCAG 46643235 Score = 387 bits (428), Expect = 4e-105 Identities = 421/559 (75%), Gaps = 60/559 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 46683966 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 46683907 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46683906 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 46683847 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 46683846 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 46683787 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 46683786 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 46683727 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 ||| | |||||| | | ||||| || ||||||| Sbjct 46683726 GGAGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 46683667 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 46683666 ACGGCCGGAGCCGGGAGGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCGTC 46683608 Query 326 CC--------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 || |||| ||||| | |||||||||||||||||||||||||| Sbjct 46683607 CCCCCCACGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACA 46683549 Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| |||| | || | | | |||| ||| ||||||||||||||||||||| Sbjct 46683548 GTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCAT 46683489 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 |||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 46683488 TCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACA 46683429 Query 486 AGCATATGACTACTGGCAG 504 |||||||| |||||||||| Sbjct 46683428 AGCATATG-CTACTGGCAG 46683411 Score = 284 bits (314), Expect = 4e-74 Identities = 217/254 (85%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 46684483 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 46684424 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46684423 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 46684364 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 46684363 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 46684304 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 46684303 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 46684244 Query 242 -AAGGCCATGCGAT 254 ||| | |||||| Sbjct 46684243 GGAGGGCGTGCGAT 46684230 Score = 77.0 bits (84), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 5/82 (6%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AG----GTACTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | || | | | |||| Sbjct 46684092 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 46684033 Query 399 TAAACGATAACTGATTTAATGA 420 ||| |||||||||||||||| Sbjct 46684032 GGAACCATAACTGATTTAATGA 46684011 >seq97 Length=173707219 Score = 387 bits (428), Expect = 4e-105 Identities = 421/559 (75%), Gaps = 60/559 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 91130590 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 91130531 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 91130530 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 91130471 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 91130470 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 91130411 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 91130410 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 91130351 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 ||| | |||||| | | ||||| || ||||||| Sbjct 91130350 GGAGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 91130291 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 91130290 ACGGCCGGAGCCGGGAGGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCGTC 91130232 Query 326 CC--------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 || |||| ||||| | |||||||||||||||||||||||||| Sbjct 91130231 CCCCCCACGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACA 91130173 Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| |||| | || | | | |||| ||| ||||||||||||||||||||| Sbjct 91130172 GTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCAT 91130113 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 |||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 91130112 TCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACA 91130053 Query 486 AGCATATGACTACTGGCAG 504 |||||||| |||||||||| Sbjct 91130052 AGCATATG-CTACTGGCAG 91130035 >seq1 Length=282763074 Score = 387 bits (428), Expect = 4e-105 Identities = 421/559 (75%), Gaps = 60/559 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 11908968 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 11909027 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11909028 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 11909087 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 11909088 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 11909147 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 11909148 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 11909207 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 ||| | |||||| | | ||||| || ||||||| Sbjct 11909208 GGAGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 11909267 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 11909268 CCGGCCGGAGCCGGGAGGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 11909326 Query 326 CC--------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 || |||| ||||| | |||||||||||||||||||||||||| Sbjct 11909327 CCCCCCACGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACA 11909385 Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| |||| | || | | | |||| ||| ||||||||||||||||||||| Sbjct 11909386 GTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCAT 11909445 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 |||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 11909446 TCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACA 11909505 Query 486 AGCATATGACTACTGGCAG 504 |||||||| |||||||||| Sbjct 11909506 AGCATATG-CTACTGGCAG 11909523 Score = 387 bits (428), Expect = 4e-105 Identities = 421/559 (75%), Gaps = 60/559 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 11967717 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 11967658 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11967657 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 11967598 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 11967597 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 11967538 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 11967537 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 11967478 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 ||| | |||||| | | ||||| || ||||||| Sbjct 11967477 GGAGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 11967418 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 11967417 CCGGCCGGAGCCGGGAGGGGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCGTC 11967359 Query 326 CC--------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 || |||| ||||| | |||||||||||||||||||||||||| Sbjct 11967358 CCCCCCACGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACA 11967300 Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| |||| | || | | | |||| ||| ||||||||||||||||||||| Sbjct 11967299 GTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCAT 11967240 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 |||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 11967239 TCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACA 11967180 Query 486 AGCATATGACTACTGGCAG 504 |||||||| |||||||||| Sbjct 11967179 AGCATATG-CTACTGGCAG 11967162 Score = 251 bits (278), Expect = 2e-64 Identities = 212/255 (83%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||||| |||| | || | ||||| |||| || ||||| | ||||||||||| Sbjct 199464510 ACTCATTCCAACTACAGGGCCTCGGAAGAGTCCTGGATTGTTATTTTTCGTCACTACCTC 199464569 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 199464570 CCCAGGTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 199464629 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||| |||||||||| |||||||||||| ||||||||| |||| | | |||||||||| Sbjct 199464630 CTCAGACTCCCTCTCCAGAATCGAACCCTGATTCCCCGTCACCCATGGTCACCATGGTAG 199464689 Query 182 GC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 || || | |||||||||||||||||||||||||| || ||||| | ||||| | Sbjct 199464690 GCACAGCA-ACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGCCGCCGCCA 199464748 Query 241 C-AAGGCCATGCGAT 254 | ||| |||||||| Sbjct 199464749 CGGAGGGCATGCGAT 199464763 >seq154 Length=133307652 Score = 217 bits (240), Expect = 4e-54 Identities = 362/508 (71%), Gaps = 60/508 (12%) Strand=Plus/Minus Query 32 CCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCC 91 |||||||| ||||| ||||||||||||||| | || | |||||||||||| | || Sbjct 122019467 CCCTGTATTGTTATTTTTTGTCACTACCTCCCTAGGGCGAAAGTGGGTAATTTGCACACC 122019408 Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 |||||||||||||||||||| ||| | ||||||||||||||||| ||||| ||| ||| Sbjct 122019407 TGCTGCCTTCCTTGGATGTGACAGCTGGTTCTCAGGCTCCCTCTCTGGAATGGAAGCCTG 122019348 Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGC-CA-CTATCCTACCATCGAAAGTTGATA 209 |||||| || |||| | | |||||||||||| || ||| ||||||| |||||||||| Sbjct 122019347 ATTCCCTGTCACCCATGGTCACCATGGTAGGCACAGCTA--CTACCAT-TAAAGTTGATA 122019291 Query 210 GGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG--GCCATGCGA--TTCGTTAAGTTA 265 ||||||| || |||| ||| ||| | |||| |||| | || | | |||||| Sbjct 122019290 GGGCAGATGTTGAAATGGGTCATTACCGACACAAGGAGCCA-GAGATCTGCCCAAAGTTA 122019232 Query 266 TTATGAA-TCACCAAGG----------AGCCCCGAA---GGGC---GTTGGTTTTTTATC 308 | |||| ||||||| | ||||| | ||| |||| ||||| | Sbjct 122019231 -TCTGAAGTCACCAAAGCCCCCATCACCGCCCCTCACCCCGGCCAGGTTGATTTTT--GC 122019175 Query 309 TAATAAATACA------CCCCTTCCGAAGTCGGGGTTTTTAG----CAT-------GTAT 351 | |||||| || |||| || || |||| | || ||| ||| Sbjct 122019174 TGATAAATGCATGAATTCCCCACCCTGAGGGGGGGGCGTCAGTGCCCATTGGTGTGTTAT 122019115 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAATAAACGATA 407 |||||||||||| ||||| |||||||| | | | || | | |||| ||| ||| Sbjct 122019114 TAGCTCTAGAATGACCACAGTTATCCAAGCATGAGAGGAGCGAGTGACAAAGGAACCATA 122019055 Query 408 ACTGATTTAATGAGCCATT----CGCAGTTTCACTGTA--TAG-ATTGCTTATACTTAGA 460 ||| ||||||||||||||| || |||||||||||| || ||| |||||||| Sbjct 122019054 ACTAATTTAATGAGCCATTCACACGAAGTTTCACTGTACCCAGCCATGC--GTACTTAGA 122018997 Query 461 CATGCATGGCTTAATCTTTGAGACAAGC 488 |||||||||||||||| ||||||||||| Sbjct 122018996 CATGCATGGCTTAATCCTTGAGACAAGC 122018969 Score = 217 bits (240), Expect = 4e-54 Identities = 362/508 (71%), Gaps = 60/508 (12%) Strand=Plus/Minus Query 32 CCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCC 91 |||||||| ||||| ||||||||||||||| | || | |||||||||||| | || Sbjct 124101633 CCCTGTATTGTTATTTTTTGTCACTACCTCCCTAGGGCGAAAGTGGGTAATTTGCACACC 124101574 Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 |||||||||||||||||||| ||| | ||||||||||||||||| ||||| ||| ||| Sbjct 124101573 TGCTGCCTTCCTTGGATGTGACAGCTGGTTCTCAGGCTCCCTCTCTGGAATGGAAGCCTG 124101514 Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGC-CA-CTATCCTACCATCGAAAGTTGATA 209 |||||| || |||| | | |||||||||||| || ||| ||||||| |||||||||| Sbjct 124101513 ATTCCCTGTCACCCATGGTCACCATGGTAGGCACAGCTA--CTACCAT-TAAAGTTGATA 124101457 Query 210 GGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG--GCCATGCGA--TTCGTTAAGTTA 265 ||||||| || |||| ||| ||| | |||| |||| | || | | |||||| Sbjct 124101456 GGGCAGATGTTGAAATGGGTCATTACCGACACAAGGAGCCA-GAGATCTGCCCAAAGTTA 124101398 Query 266 TTATGAA-TCACCAAGG----------AGCCCCGAA---GGGC---GTTGGTTTTTTATC 308 | |||| ||||||| | ||||| | ||| |||| ||||| | Sbjct 124101397 -TCTGAAGTCACCAAAGCCCCCATCACCGCCCCTCACCCCGGCCAGGTTGATTTTT--GC 124101341 Query 309 TAATAAATACA------CCCCTTCCGAAGTCGGGGTTTTTAG----CAT-------GTAT 351 | |||||| || |||| || || |||| | || ||| ||| Sbjct 124101340 TGATAAATGCATGAATTCCCCACCCTGAGGGGGGGGCGTCAGTGCCCATTGGTGTGTTAT 124101281 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAATAAACGATA 407 |||||||||||| ||||| |||||||| | | | || | | |||| ||| ||| Sbjct 124101280 TAGCTCTAGAATGACCACAGTTATCCAAGCATGAGAGGAGCGAGTGACAAAGGAACCATA 124101221 Query 408 ACTGATTTAATGAGCCATT----CGCAGTTTCACTGTA--TAG-ATTGCTTATACTTAGA 460 ||| ||||||||||||||| || |||||||||||| || ||| |||||||| Sbjct 124101220 ACTAATTTAATGAGCCATTCACACGAAGTTTCACTGTACCCAGCCATGC--GTACTTAGA 124101163 Query 461 CATGCATGGCTTAATCTTTGAGACAAGC 488 |||||||||||||||| ||||||||||| Sbjct 124101162 CATGCATGGCTTAATCCTTGAGACAAGC 124101135 >seq301 Length=56205956 Score = 150 bits (166), Expect = 5e-34 Identities = 123/147 (84%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||| ||||||||| | || |||||| ||||||| ||||| | |||||||||| Sbjct 56181558 ACTCATCCCAATTACAGGGCCTTGAAAGAGTCCTGTATTGTTATTTTTCATCACTACCTC 56181617 Query 62 CCCGTGTCGGG-ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| || ||| | |||||||||||| ||||||||||||||||||||||||||||| | Sbjct 56181618 CCCAGGTTGGGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTGGTAGCCACT 56181677 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAAC 147 ||||||||||||||||| ||||| ||| Sbjct 56181678 TCTCAGGCTCCCTCTCCAGAATCAAAC 56181704 >seq206 Length=52716770 Score = 145 bits (160), Expect = 2e-32 Identities = 173/233 (74%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||| | | | ||||| |||||| |||| | ||||||||||| || Sbjct 18205361 TCATTCCAATTAGA-GTCTTAAAAGTATTCTGTATTGCTATTATTGGTCACTACCTCTCC 18205303 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | ||| ||| || | |||| | ||||||||||||||||| || ||||||| ||||||| Sbjct 18205302 GGGTCAGGAGTGAGCAATTCTTGTGCCTGCTGCCTTCCTTGAATATGGTAGCAGTTTCTC 18205243 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 || ||| | || | || | |||||| ||| || || || || | ||||||| | | | Sbjct 18205242 AGAATCCTTGTCTGTAAACTAACCCTGATTTCCTGTCACTTGTGGTCACCATGGCAAGGC 18205183 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 | ||||||| ||||||| |||||||||| ||||||||| ||| |||| Sbjct 18205182 A----TCTACCATTGAAAGTTCATAGGGCAGACATTTGAATGGGTCATTGCCG 18205134 Score = 107 bits (118), Expect = 6e-21 Identities = 129/173 (75%), Gaps = 18/173 (10%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-CTAT-------- 394 ||||||||||| |||| ||| ||||| |||||||| |||| | | | | || Sbjct 18204955 GCATGTATTAGTTCTATAATCACCACAGTTATCCAAGTAGAAGAGAAGCCATTGGCCAAG 18204896 Query 395 --CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTT 451 |||| ||| |||| |||||||||||||| || | ||||||||||| || | Sbjct 18204895 ACCAAAGGAACCATAATGGATTTAATGAGCCACTCACTGTTTCACTGTACCAG-----TC 18204841 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||| ||||||||||| ||||| || ||| |||||| ||| Sbjct 18204840 ATACTTAGACATTCATGACTTAATCTTTGGGACAAACACATG-CTACTGACAG 18204789 >seq55 Length=177699992 Score = 118 bits (130), Expect = 3e-24 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 71450629 CGGGCCTGCTGCCTTCCTTGGATGTGGTAGCTGTTTCTCAGGCTCCCTCTCCGGAATTGA 71450688 Query 146 ACCCTAATTCCCCGT 160 ||||| ||||||||| Sbjct 71450689 ACCCTGATTCCCCGT 71450703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510385575680