Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq297 311 7e-80 seq1 102 6e-17 seq129 96.9 3e-15 seq117 89.7 4e-13 >seq297 Length=62275575 Score = 311 bits (344), Expect = 7e-80 Identities = 621/910 (68%), Gaps = 15/910 (2%) Strand=Plus/Plus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| ||||| || |||||||| | || |||||||| || | ||||| |||| ||||| Sbjct 25391975 AGAAAATCCCCGCCGTTTCGTTGTCTTTCCCATCGAATACCATGATATCTGGCAGATGTA 25392034 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 ||| || || || || ||||| ||||| | |||||||| || | ||||| || || | Sbjct 25392035 CAAGAAAGCTGAGGCCTCCTTTTGGACTGCCGAGGAGGTGGACCTTTCCAAGGATATTCA 25392094 Query 61161 TGACTGGGAGCGTTT--ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 ||||||| | | | | || | || |||||| || ||||| |||| ||| Sbjct 25392095 GCACTGGGAAGCTCTGAAACCAGATGAGAG--ACATTTTATATCTCATGTTCTGGCCTTC 25392152 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGT 61277 ||||| || || || || ||||||||||| || |||| || ||| || || || || Sbjct 25392153 TTTGCGGCGAGTGATGGCATAGTCAATGAGAACTTGGTGGAGCGATTTAGC-CAAGAAGT 25392211 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 ||||| | ||||| || |||||||| |||||||| |||||||||||||| | ||||| Sbjct 25392212 TCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAGAACATACACTC 25392271 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATT 61397 || ||||||||| | || || || || ||||| | || ||| | ||| | Sbjct 25392272 CGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGATTCCAAAGAAAGAGAATATCT 25392331 Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 ||||| ||||| ||||| || || |||||| ||| || || |||||||| ||| Sbjct 25392332 CTTCAACGCCATTGAGACAATGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGTTG 25392391 Query 61458 GATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||| | |||| |||||| | ||| |||||| | |||| || || | ||| || Sbjct 25392392 GAT--TGGGGACAAAGAGGCTACGTATGGAGAACGAGTTGTGGCCTTCGCTGCGGTAGAA 25392449 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | || || ||| || ||||| |||| || ||| | |||||||| ||||| ||| Sbjct 25392450 GGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAAACGGGGACTGATG 25392509 Query 61576 CCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 || || || || || ||||| | || || || | || ||||| |||| ||||| || Sbjct 25392510 CCGGGCCTTACATTTTCCAATGAACTTATTAGCA-GAGATGAGGGTCTGCACTGTGACTT 25392568 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694 ||| || | ||||| | | ||||| | || |||||| || | || || Sbjct 25392569 TGCCTGCCTGATGTTCAAGC---ACCTGGTACACAAGCCCTCGGAGCAGAGAGTAAAAGA 25392625 Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754 || || | ||||| | || || ||||| || || || || || |||| || Sbjct 25392626 AATAATTACCAACGCGGTCAGGATAGAGCAGGAGTTCCTCACAGAGGCCCTGCCTGTGAA 25392685 Query 61755 ACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 |||||||| |||||||| | ||| |||||| || || ||||| |||||| | || Sbjct 25392686 GCTCATCGGGATGAATTGCACCTTGATGAAGCAGTACATCGAGTTTGTGGCCGACAGGCT 25392745 Query 61815 GTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 || | || ||||| | || ||| | || |||| |||||||| |||||||| Sbjct 25392746 TATGCTGGAGCTGGGTTTTAACAAGATTTTCAAAGTAGAAAATCCATTTGACTTCATGGA 25392805 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACG 61934 | ||||| || || || || || || || || ||||| || |||||||| || || | Sbjct 25392806 GAATATTTCACTAGAAGGAAAAACAAACTTCTTTGAGAAGCGAGTAGGCGAGTACCAGAG 25392865 Query 61935 TTTGGGTGTA 61944 |||| ||| Sbjct 25392866 GATGGGAGTA 25392875 >seq1 Length=282763074 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || || |||||||| || ||||| ||||| |||| ||||| || Sbjct 167553504 GGTGTACTCTACTATCTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTG 167553445 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || || || | || ||||| | |||||| || ||||| ||||| || Sbjct 167553444 GTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTG 167553385 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||||| |||||| Sbjct 167553384 AGACTCAATGATGGCGTACCAAAG 167553361 >seq129 Length=145729302 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| || |||||||| || | ||||| || || ||||| ||||| |||| Sbjct 76761262 TGGAGCGTTTTAGTCAAGAGGTGCAGGTTCCAGAGGCTCGCTGCTTCTATGGCTTTCAGA 76761203 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || || || |||||||| | Sbjct 76761202 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCAGAG 76761143 Query 61376 A 61376 | Sbjct 76761142 A 76761142 >seq117 Length=147991367 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || ||||| | ||||| || |||||||| |||||||| Sbjct 43886648 TGGAGCGATTTAGC-CAAGAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAA 43886706 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||||||| | ||||| || ||||||||| | || || || || ||||| Sbjct 43886707 ATTGCCATGGAGAACATACACTCCGAAATGTACAGTCTCCTTATTGACACTTACAT 43886762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563372681200