Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1141 98.7 4e-18 seq2828 91.5 6e-16 seq726 89.7 2e-15 seq2848 75.2 5e-11 >seq1141 Length=1003051 Score = 98.7 bits (108), Expect = 4e-18 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 994587 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 994528 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| Sbjct 994527 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTG 994471 >seq2828 Length=6275 Score = 91.5 bits (100), Expect = 6e-16 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | | || ||||| |||||||||||||||||| ||| |||||||||||| || Sbjct 1942 GAGCACACGTATTAGGACCTGAAAGATGGTGAACTATGTCTGGGAAGGGTGAAGCCAAAG 2001 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||| | ||||||||| | | ||| ||| |||||||| | || || | || ||| Sbjct 2002 GAAAAT-TGGTGGAGGTCTGTAATGGTCCTGATGTGCAAATTGGTCATCTGACCTGTGTA 2060 Query 675 TAGGGGC 681 ||||||| Sbjct 2061 TAGGGGC 2067 >seq726 Length=2641983 Score = 89.7 bits (98), Expect = 2e-15 Identities = 60/66 (91%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 1523445 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 1523386 Query 624 G-TGGA 628 | |||| Sbjct 1523385 GCTGGA 1523380 >seq2848 Length=2476 Score = 75.2 bits (82), Expect = 5e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | | || ||||| |||||||||||||||||| || | |||||||||| || Sbjct 1443 GAGCACACGTATTAGGACCTGAAAGATGGTGAACTATGTCTTGGAACGGTGAAGCCAAAG 1502 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAAT 655 |||||| ||||||||| | | ||| ||| |||||||| Sbjct 1503 GAAACT-TGGTGGAGGTCTGTAAAGGTCCTGATGTGCAAAT 1542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079691484650