Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3219 300 3e-79 seq321 134 2e-29 seq119 118 2e-24 >seq3219 Length=1860 Score = 300 bits (332), Expect = 3e-79 Identities = 224/260 (86%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1692 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1633 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 1632 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 1573 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | ||||||||||||||| |||||| Sbjct 1572 TGCGGAGGGATGGCTCCGCTTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 1513 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1512 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 1453 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 1452 GAAAGAGCTCTCAGTCTGTC 1433 >seq321 Length=5251196 Score = 134 bits (148), Expect = 2e-29 Identities = 94/105 (90%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| |||| |||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 3020529 GTCTCATTCATTATTGGAATTAACCAGACAAATCACTCCACCAGCTAAGAATGGCCATGC 3020470 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTA---TCAAT-CTGTCC 259 ||||||||||| ||||||||||||||| || ||||| |||||| Sbjct 3020469 ACCACCACCCACAGAATCAAGAAAGAGATATTGTCAATCCTGTCC 3020425 >seq119 Length=4455893 Score = 118 bits (130), Expect = 2e-24 Identities = 171/237 (72%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 |||| |||||| | || | | |||||| |||||||||||||||| ||||| | |||| Sbjct 185196 GTCACTGTAGCACATGTACAGTCCCAGA-CATCTAAGGGCATCACCAACCTGCTGTTGCT 185254 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||| || | |||| | ||| | |||||||| || || | | | || ||| Sbjct 185255 --AAATCTCGGATAGCTGAACACCACTTGTCCCTCTTAGGAGTTTGAAA--ATGCAGAGT 185310 Query 134 CG------ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | ||| ||| |||||| | | ||||| |||| || |||||| ||||||| Sbjct 185311 TGGGGGTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCGATACTGGAATTTACCAGAC 185370 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||| ||||||||| |||||| ||||| ||||| ||||||| ||||||||||||| Sbjct 185371 AAATCCCTCCACCAAGTAAGAATGGCCACACACCAACACCCATGGAATCAAGAAAGA 185427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796688977623