Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13]
14,383 sequences; 2,372,553,907 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq3219 320 3e-85
seq208 113 9e-23
seq119 89.7 1e-15
>seq3219
Length=1860
Score = 320 bits (354), Expect = 3e-85
Identities = 227/259 (88%), Gaps = 1/259 (0%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||||| | | || ||| |||||||||||||||||||||||||||
Sbjct 1577 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 1636
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 1637 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 1696
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 1697 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 1756
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1757 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 1816
Query 310 TACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 1817 TACGTCCCTGCCCTTTGTA 1835
>seq208
Length=6078508
Score = 113 bits (124), Expect = 9e-23
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183
|||||||||||||||||||||| |||| ||| || |||||||| | | || | |
Sbjct 5101545 GTCTGTGATGCCCTTAGATGTTGGGGGCTACACACGTACTACACTGCCTGGCTCAGCATG 5101604
Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243
| | | ||| |||| |||| ||||| | | || | | || || |||||||
Sbjct 5101605 TGCCTACCCTACACCGGCAGGTACAGGTAACCCGTTGAACCCCACTCATGATGGGGATCA 5101664
Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303
| |||||||||||| | | | ||| |||||| || ||||||||| ||||| | | |
Sbjct 5101665 GGGATTGCAATTATTCCCCATGAACAAGGAATTCCCAGTAAGCGCAGGTCATAAACTTGT 5101724
Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328
|||||||| | ||||||||||||||
Sbjct 5101725 GTTGATTAAGCCCCTGCCCTTTGTA 5101749
>seq119
Length=4455893
Score = 89.7 bits (98), Expect = 1e-15
Identities = 154/217 (71%), Gaps = 9/217 (4%)
Strand=Plus/Minus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGG-CCGCACGCGCGCTACACTGACA 172
|||| | ||||| |||||||||||||||| |||||| | | || | |||||| ||||
Sbjct 185253 GCAACAGCAGGTTGGTGATGCCCTTAGATG-TCTGGGACTGTACATGTGCTACAGTGACT 185195
Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCG 231
| || | | | || |||| || || || | | ||||| | ||| ||| ||| | |
Sbjct 185194 GGTCCCGCATGCGCCTCCCCTTTGCTGGCAGATGT-GGTAA-CCTGTCGAACCCTGTTGG 185137
Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291
| ||||||| | | ||||||||| || | | | | ||||||| || | ||| || | |
Sbjct 185136 GGATGGGGATTGGGGATTGCAATTTTTCCCCGTGAGTGAGGAATTCCCAATAAACGTGGG 185077
Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|||| ||| || |||| ||||||||| ||||||
Sbjct 185076 TCATAAGCTAGC----ATTAAGTCCCTGCCATTTGTA 185044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947063764224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |