Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3219 320 3e-85 seq208 113 9e-23 seq119 89.7 1e-15 >seq3219 Length=1860 Score = 320 bits (354), Expect = 3e-85 Identities = 227/259 (88%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||| | | || ||| ||||||||||||||||||||||||||| Sbjct 1577 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 1636 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 1637 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 1696 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 1697 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 1756 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1757 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 1816 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 1817 TACGTCCCTGCCCTTTGTA 1835 >seq208 Length=6078508 Score = 113 bits (124), Expect = 9e-23 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 |||||||||||||||||||||| |||| ||| || |||||||| | | || | | Sbjct 5101545 GTCTGTGATGCCCTTAGATGTTGGGGGCTACACACGTACTACACTGCCTGGCTCAGCATG 5101604 Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 | | | ||| |||| |||| ||||| | | || | | || || ||||||| Sbjct 5101605 TGCCTACCCTACACCGGCAGGTACAGGTAACCCGTTGAACCCCACTCATGATGGGGATCA 5101664 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303 | |||||||||||| | | | ||| |||||| || ||||||||| ||||| | | | Sbjct 5101665 GGGATTGCAATTATTCCCCATGAACAAGGAATTCCCAGTAAGCGCAGGTCATAAACTTGT 5101724 Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328 |||||||| | |||||||||||||| Sbjct 5101725 GTTGATTAAGCCCCTGCCCTTTGTA 5101749 >seq119 Length=4455893 Score = 89.7 bits (98), Expect = 1e-15 Identities = 154/217 (71%), Gaps = 9/217 (4%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGG-CCGCACGCGCGCTACACTGACA 172 |||| | ||||| |||||||||||||||| |||||| | | || | |||||| |||| Sbjct 185253 GCAACAGCAGGTTGGTGATGCCCTTAGATG-TCTGGGACTGTACATGTGCTACAGTGACT 185195 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCG 231 | || | | | || |||| || || || | | ||||| | ||| ||| ||| | | Sbjct 185194 GGTCCCGCATGCGCCTCCCCTTTGCTGGCAGATGT-GGTAA-CCTGTCGAACCCTGTTGG 185137 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 | ||||||| | | ||||||||| || | | | | ||||||| || | ||| || | | Sbjct 185136 GGATGGGGATTGGGGATTGCAATTTTTCCCCGTGAGTGAGGAATTCCCAATAAACGTGGG 185077 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| || |||| ||||||||| |||||| Sbjct 185076 TCATAAGCTAGC----ATTAAGTCCCTGCCATTTGTA 185044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947063764224