Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq622 298 2e-78 seq841 212 2e-52 seq844 210 7e-52 seq94 179 1e-42 seq970 172 2e-40 seq531 154 5e-35 seq1235 147 7e-33 seq1396 86.0 2e-14 seq222 75.2 4e-11 >seq622 Length=956070 Score = 298 bits (330), Expect = 2e-78 Identities = 204/230 (89%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | | ||||||||||||| |||| Sbjct 399223 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGGTCAA 399282 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||| || | Sbjct 399283 CAGGGTCTTCTTTCCCCCCTGATTCCACCAAGCCTGTTCCCCTGGCTGTGGTTTCACTGG 399342 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||| ||| |||||||||||||||||| ||| |||||||||||| |||||||||||| || Sbjct 399343 ATACTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGCATGTCACTAATTAGGTG 399402 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 | |||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 399403 ATGAGGCATTTGGCTACCTTAAGAGAGTCATATTTACTCCCGAAATTTAC 399452 >seq841 Length=2535568 Score = 212 bits (234), Expect = 2e-52 Identities = 166/197 (84%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 ||||||| | | ||| || |||||||| ||||||||| ||| |||||||| ||||||||| Sbjct 174498 CTTGGCTATAGCTTCTCTGGATAGTAGGTAGGGACAGCGGGTATCTCGTTCATCCATTCA 174439 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||| | |||||||||||| || ||||||||||||||||| | | ||| ||||||| ||| Sbjct 174438 TGCATGACACTAATTAGATAACAAGGCATTTGGCTACCTTGAAAAAGTAATAGTTATTCC 174379 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 | || |||| | || | | ||||||||||||||||||||||||||| ||||||||| || Sbjct 174378 CACCATTTA-CTGCACCTCATTGAATTTCTTCACTTTGACATTCAGAACACTGGGCAAAA 174320 Query 517 ATCACATTGCGTCAACA 533 |||||||| ||||||| Sbjct 174319 GTCACATTGTGTCAACA 174303 >seq844 Length=2097631 Score = 210 bits (232), Expect = 7e-52 Identities = 221/297 (74%), Gaps = 29/297 (10%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||||| |||| ||||| |||| ||||| | | | |||||| ||||||||||| Sbjct 949416 CTTCCACTTATTTTACATCTCTCGTGTCACTTCACCATGCCAGACTAGGGTCAAGCTCAA 949475 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| ||| || ||||| ||||| || Sbjct 949476 CAGGGTCTTCTTTCCCCA------------------TTCTCTATGCTGTAGTTTCTCTGA 949517 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||| ||||||||||| ||| || |||||| | | |||||||||| || Sbjct 949518 ATAGTAGGTAGGGATAGTGGGAATCTTGTTCATTCATTCACGTGGAGCACTAATTAGGTG 949577 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||| || || || | ||| | |||| Sbjct 949578 GTGAGGCATTTGGCTACCTTAAGAGGGTTATTGT-----------TGTACTCAGGCTTCA 949626 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||| Sbjct 949627 CTGAATTTCTCCACTTTGACATTTGGAGTACTGGGCAGAAATCACATTGCATCAACA 949683 >seq94 Length=4638224 Score = 179 bits (198), Expect = 1e-42 Identities = 216/286 (76%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCAACA 298 ||||||| | || | | | | |||| | ||| | ||| || || | ||| | ||| Sbjct 4431220 CCACTTAATGTATGCTTTTTATGTCACTACACCATGTCAGGTTTACAATCAGTTTTAACT 4431161 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 | ||||||||| || | |||| ||||||| |||||||||||||||||| | || Sbjct 4431160 GAGTCTTCTTTGACCTCAGATTTTTCCAAGCCA-TTCCCTTGGCTGTGGTTTTATCAAAT 4431102 Query 359 AGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 | ||| || |||||| | || | || || |||| ||||||| | || |||||||||||| Sbjct 4431101 AATAGGTAAAGACAGTAGAAAATGTCATTCATCCGTTCATGCACATCTCTAATTAGATGA 4431042 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG-TTTACCCGCGCTTGG 476 || ||| |||||||||||||||||||||||||||| ||| || |||| | |||| Sbjct 4431041 CGGAGCACTTGGCTACCTTAAGAGAGTCATAGTTACACCCATCGATTTATATGGGCTTCA 4430982 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACT-GGGCAGAAATCAC 521 |||||||||||||||||||||||||| | || |||| ||||||| Sbjct 4430981 CTGAATTTCTTCACTTTGACATTCAGAACGCTAAGGCA-AAATCAC 4430937 >seq970 Length=546616 Score = 172 bits (190), Expect = 2e-40 Identities = 142/172 (83%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||| | ||| |||||||||||| ||||| | |||||||| | || |||| || || Sbjct 507997 GACTGGGGTCCAGCTCAACAGGGCCTTCTACCTTCGCTGATTTCACCGGGCCCTTTTGCT 508056 Query 339 T-GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 | |||||||||||| || | |||||| ||||||||| |||||| || | |||||||||| Sbjct 508057 TTGGCTGTGGTTTCACTGGGTAGTAGGTAGGGACAGGGGGAATGTCCCTCATCCATTCAT 508116 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 | |||||||||||||||||| ||||| ||||||||| |||||||||||||| Sbjct 508117 GAGCGTCACTAATTAGATGATGAGGCTTTTGGCTACTGTAAGAGAGTCATAG 508168 >seq531 Length=1164849 Score = 154 bits (170), Expect = 5e-35 Identities = 169/220 (77%), Gaps = 11/220 (5%) Strand=Plus/Minus Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| ||||||| ||||||| ||||| |||| || ||||||| ||| ||| | Sbjct 193380 CTTTCCCTTCTGATTCTGCCAAGCTAGTTCC-TTGGTTGCA-TTTCGCTGAATACTAGGT 193323 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||| | | |||| |||| ||| || |||||| | ||| || ||| |||| |||| || Sbjct 193322 AGGAATATTGGGGATCTTGTTCCTCTATTCATAGACATCATTATTTACATGATGAGGTAT 193263 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCG----CCGTTTACCCGCGCTTGGTTGAA 481 ||||||||| | |||| | ||| |||||||| || | ||| | ||| |||| Sbjct 193262 TTGGCTACCCT--GAGAATTATACTTACTCCCTGATACCCT---CCCTCACTTCACTGAA 193208 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||||||||||||||||||||||||||||||||||||||| Sbjct 193207 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 193168 >seq1235 Length=812675 Score = 147 bits (162), Expect = 7e-33 Identities = 108/126 (86%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 || ||||||||| |||||| |||| ||||||||| | || ||||||||||| || |||| Sbjct 584218 CTGATTAGATGATGAGGCAATTGGTTACCTTAAGCGCGTTGTAGTTACTCCCACCATTTA 584277 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || |||||| | |||||||||| ||||||||||||||||||||||||||||||| || Sbjct 584278 CCTGCGCTTCATCGAATTTCTTCGCTTTGACATTCAGAGCACTGGGCAGAAATCAGATCA 584337 Query 526 CGTCAA 531 |||||| Sbjct 584338 CGTCAA 584343 >seq1396 Length=431498 Score = 86.0 bits (94), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 6/112 (5%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||| |||| |||| ||||||||| ||| ||||||| | |||| | |||| | Sbjct 110871 GACTAGAGGCAAGATCAATAGGGTCTTC----CCCACTGATTCATC-AAGCTCCTTCC-T 110924 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 ||||||||||||| || |||||||| | ||||||| |||| || || ||| Sbjct 110925 TGGCTGTGGTTTCACTGGATAGTAGGAACAGACAGTGAGAATTTCATTCATC 110976 >seq222 Length=8580851 Score = 75.2 bits (82), Expect = 4e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||| ||||||||| || | || | || ||||||| | ||| |||||| ||||||||| Sbjct 4591693 CTTAGGAGAGTCATGGTAATTCTCACCATTTACCCACACTTCAATGAATTACTTCACTTT 4591752 Query 494 GACATTCAGAGCACTG 509 |||||||||||| ||| Sbjct 4591753 GACATTCAGAGCTCTG 4591768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634964809184