Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3219 251 2e-64 seq119 100 9e-19 seq168 87.8 5e-15 seq580 77.0 1e-11 >seq3219 Length=1860 Score = 251 bits (278), Expect = 2e-64 Identities = 181/205 (88%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| | ||||| || ||||||||||||| | ||| ||||||||||||| Sbjct 224 TTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 165 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||||||||| |||| | | ||| |||||| |||| |||||||||||||||| Sbjct 164 AATTACTACGGTTATCCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATGA 106 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| || | |||| || |||||| |||||||||||||||||||| Sbjct 105 GCCATTCGCAGTTTCACAGTTCAAATTGGTTCATACTTGCACATGCATGGCTTAATCTTT 46 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 45 GAGACAAGCATATGACTACTGGCAG 21 Score = 165 bits (182), Expect = 2e-38 Identities = 114/128 (89%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 500 GTACTCATTCCAATTACCAGACACTAATGCGCCCGGTATTGTTATTTATTGTCACTACCT 441 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA-GCCGT 119 ||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 440 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGGAGGCCGT 381 Query 120 TTCTCAGG 127 | ||| || Sbjct 380 TACTCTGG 373 >seq119 Length=4455893 Score = 100 bits (110), Expect = 9e-19 Identities = 115/152 (76%), Gaps = 11/152 (7%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||| |||||||||||| || ||||| || |||| | || || ||||||||| Sbjct 186242 ACTCACTCCAATTACAAGGCCTGGAAAGAATCCCGTATTACCTTTCAT---CACTACCTC 186298 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| || ||||||| || | ||||||| ||| ||||| |||||| | ||| Sbjct 186299 CCCAGGTCAGG------TAATTTGTGCAC-TGCTGCCCTCCCTGGATATGGTAGTCATTT 186351 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAAT 153 ||||||||||||||| ||| || |||||| || Sbjct 186352 CTCAGGCTCCCTCTCTGGACTCAAACCCTGAT 186383 >seq168 Length=2064216 Score = 87.8 bits (96), Expect = 5e-15 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA-----GGTACTATCAAA 398 ||||||||||| |||||||||| || ||||| || |||| | || || | |||| Sbjct 1373018 GCATGTATTAGTTCTAGAATTATCATAGTTATTCAAGTAGGAGAGGAGGGAACAACCAAA 1373077 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 ||| |||||||||||||||||||||| | ||||| |||||| Sbjct 1373078 GGAACCATAACTGATTTAATGAGCCATTTGTAGTTTTACTGTA 1373120 >seq580 Length=229275 Score = 77.0 bits (84), Expect = 1e-11 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141 |||| | |||||||||||||| ||| ||||||| | ||||||||||||||| ||||||| Sbjct 57006 TTTGGGTGCCTGCTGCCTTCCCCGGACGTGGTAGTCCTTTCTCAGGCTCCCTTTCCGGAA 56947 Query 142 TCGAACCCTAATTCCCC 158 | |||| ||| ||| Sbjct 56946 CTGTACCCAGATTTCCC 56930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510182759168