Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13]
14,383 sequences; 2,372,553,907 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq3219 251 2e-64
seq119 100 9e-19
seq168 87.8 5e-15
seq580 77.0 1e-11
>seq3219
Length=1860
Score = 251 bits (278), Expect = 2e-64
Identities = 181/205 (88%), Gaps = 3/205 (1%)
Strand=Plus/Minus
Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| | ||||| || ||||||||||||| | ||| |||||||||||||
Sbjct 224 TTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 165
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||| |||||||||| |||| | | ||| |||||| |||| ||||||||||||||||
Sbjct 164 AATTACTACGGTTATCCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATGA 106
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479
||||||||||||||||| || | |||| || |||||| ||||||||||||||||||||
Sbjct 105 GCCATTCGCAGTTTCACAGTTCAAATTGGTTCATACTTGCACATGCATGGCTTAATCTTT 46
Query 480 GAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||
Sbjct 45 GAGACAAGCATATGACTACTGGCAG 21
Score = 165 bits (182), Expect = 2e-38
Identities = 114/128 (89%), Gaps = 1/128 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| | || | |||| |||| ||||||||||||||||||
Sbjct 500 GTACTCATTCCAATTACCAGACACTAATGCGCCCGGTATTGTTATTTATTGTCACTACCT 441
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA-GCCGT 119
||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 440 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGGAGGCCGT 381
Query 120 TTCTCAGG 127
| ||| ||
Sbjct 380 TACTCTGG 373
>seq119
Length=4455893
Score = 100 bits (110), Expect = 9e-19
Identities = 115/152 (76%), Gaps = 11/152 (7%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
||||| |||||||||||| || ||||| || |||| | || || |||||||||
Sbjct 186242 ACTCACTCCAATTACAAGGCCTGGAAAGAATCCCGTATTACCTTTCAT---CACTACCTC 186298
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
||| ||| || ||||||| || | ||||||| ||| ||||| |||||| | |||
Sbjct 186299 CCCAGGTCAGG------TAATTTGTGCAC-TGCTGCCCTCCCTGGATATGGTAGTCATTT 186351
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAAT 153
||||||||||||||| ||| || |||||| ||
Sbjct 186352 CTCAGGCTCCCTCTCTGGACTCAAACCCTGAT 186383
>seq168
Length=2064216
Score = 87.8 bits (96), Expect = 5e-15
Identities = 81/103 (79%), Gaps = 5/103 (5%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA-----GGTACTATCAAA 398
||||||||||| |||||||||| || ||||| || |||| | || || | ||||
Sbjct 1373018 GCATGTATTAGTTCTAGAATTATCATAGTTATTCAAGTAGGAGAGGAGGGAACAACCAAA 1373077
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441
||| |||||||||||||||||||||| | ||||| ||||||
Sbjct 1373078 GGAACCATAACTGATTTAATGAGCCATTTGTAGTTTTACTGTA 1373120
>seq580
Length=229275
Score = 77.0 bits (84), Expect = 1e-11
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141
|||| | |||||||||||||| ||| ||||||| | ||||||||||||||| |||||||
Sbjct 57006 TTTGGGTGCCTGCTGCCTTCCCCGGACGTGGTAGTCCTTTCTCAGGCTCCCTTTCCGGAA 56947
Query 142 TCGAACCCTAATTCCCC 158
| |||| ||| |||
Sbjct 56946 CTGTACCCAGATTTCCC 56930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510182759168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |