Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq3418 122 4e-25
seq53 104 1e-19
seq33 102 3e-19
>seq3418
Length=22951
Score = 122 bits (134), Expect = 4e-25
Identities = 99/120 (83%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| || || |||||||||||||||||||||| |||| |||||| |||||||||||
Sbjct 21967 TGTTAGGGCCTGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCATAGGAAACTCTG 21908
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| | |||||| ||| ||||||||||| ||||| | |||||||||||| ||
Sbjct 21907 GTGGAGGTCTGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGTGA 21848
>seq53
Length=3463090
Score = 104 bits (114), Expect = 1e-19
Identities = 72/82 (88%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 2992254 TGTTAGGACCCGAAAGATGGTGAACTATGCCCGGGCAGGGCGAAGCCAGAGGAAACTCTG 2992313
Query 624 GTGGAGGCTCGCAGCGGTTCTG 645
||||||| || |||||| |||
Sbjct 2992314 GTGGAGGTCCGTAGCGGTCCTG 2992335
>seq33
Length=3996623
Score = 102 bits (112), Expect = 3e-19
Identities = 118/158 (75%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| |||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 1377790 GAGTCAGGTTGCTTGGGAATGCAGGCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1377849
Query 100 ATTGGCCAGAGACCGATAG-CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| ||| ||||| ||||| | ||||||| | | |||| ||||||| |||||| |
Sbjct 1377850 ATCGGCGTGAGACTGATAGTCAAACAAGTACTGAAAGACAAAGTTGAAAAGAACTTTGAA 1377909
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196
|||||||| || || |||||| |||| | ||| ||
Sbjct 1377910 GAGAGAGTTCAAGAGGGGGTGAAACTGTTAAGAGGTAA 1377947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2078252532850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |