Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3418 122 4e-25 seq53 104 1e-19 seq33 102 3e-19 >seq3418 Length=22951 Score = 122 bits (134), Expect = 4e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || |||||||||||||||||||||| |||| |||||| ||||||||||| Sbjct 21967 TGTTAGGGCCTGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCATAGGAAACTCTG 21908 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | |||||| ||| ||||||||||| ||||| | |||||||||||| || Sbjct 21907 GTGGAGGTCTGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGTGA 21848 >seq53 Length=3463090 Score = 104 bits (114), Expect = 1e-19 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||| Sbjct 2992254 TGTTAGGACCCGAAAGATGGTGAACTATGCCCGGGCAGGGCGAAGCCAGAGGAAACTCTG 2992313 Query 624 GTGGAGGCTCGCAGCGGTTCTG 645 ||||||| || |||||| ||| Sbjct 2992314 GTGGAGGTCCGTAGCGGTCCTG 2992335 >seq33 Length=3996623 Score = 102 bits (112), Expect = 3e-19 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| |||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 1377790 GAGTCAGGTTGCTTGGGAATGCAGGCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1377849 Query 100 ATTGGCCAGAGACCGATAG-CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||| ||||| | ||||||| | | |||| ||||||| |||||| | Sbjct 1377850 ATCGGCGTGAGACTGATAGTCAAACAAGTACTGAAAGACAAAGTTGAAAAGAACTTTGAA 1377909 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || |||||| |||| | ||| || Sbjct 1377910 GAGAGAGTTCAAGAGGGGGTGAAACTGTTAAGAGGTAA 1377947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078252532850