Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq3826 244 2e-62
seq76 237 3e-60
seq1897 98.7 2e-18
>seq3826
Length=12179
Score = 244 bits (270), Expect = 2e-62
Identities = 208/251 (83%), Gaps = 9/251 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 7085 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 7027
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | |||||||||||||| | | || ||| |
Sbjct 7026 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 6968
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 6967 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 6908
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 6907 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 6848
Query 248 ATCAATCTGTC 258
|||||||||||
Sbjct 6847 ATCAATCTGTC 6837
>seq76
Length=3169050
Score = 237 bits (262), Expect = 3e-60
Identities = 205/249 (82%), Gaps = 9/249 (4%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||| |
Sbjct 2652882 GTCAGTGTAGCGCGCGTACAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 2652940
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | |||||||||||||| | | || ||| |
Sbjct 2652941 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 2652999
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 2653000 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 2653059
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2653060 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 2653119
Query 248 ATCAATCTG 256
|||||||||
Sbjct 2653120 ATCAATCTG 2653128
>seq1897
Length=303014
Score = 98.7 bits (108), Expect = 2e-18
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | || | |||| |||| |||||||||||| ||||| |||||||
Sbjct 58352 CTAGTTAGCATGCCAGAGTTTTGTTCATTATAGGAATTAACCAGGCAAATTACTCCACTG 58411
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
| ||||||| |||||||||||||| || ||||| ||||||||| |||||
Sbjct 58412 AATAAGAACAGCCATGCACCACCATGCACAGAATTGGGAAAGAGCTTTCAAT 58463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796171156227
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |