Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq87 201 2e-49 seq174 172 9e-41 >seq87 Length=2996802 Score = 201 bits (222), Expect = 2e-49 Identities = 175/216 (81%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 79 TCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138 ||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||| Sbjct 529572 TCACGTTCCCTATTAGTGGGTAAACAATCCAACGCTTGGTGAATTCTGTTTCAAAATGAT 529631 Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 || || || ||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 529632 AGTAAT-GCTGACATCGAAGGATCAAAAAGCAATATCGCTATGAATGCTTGGCTGCCACA 529690 Query 199 AGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAA 258 |||||||||||||||||| || ||||||| |||||| || | ||| | | | | Sbjct 529691 AGCCAGTTATCCCTGTGGCAAGTTTTCTGACACCTCCTGCTTAAAACCCAAAACGTCCGA 529750 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||||| ||||| |||||| || |||||||| Sbjct 529751 AAGATCGTGAGGCCCTGCTTTCACAGTCTGTATTCA 529786 >seq174 Length=2284954 Score = 172 bits (190), Expect = 9e-41 Identities = 181/235 (77%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | |||||| | | | || | | ||||| |||||||||| ||| || Sbjct 871221 TACTAAGCAGGATTACCGTGGCCACAACACATTACCAGTAAGGTAAAACTAGCCTATCCT 871162 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||| |||||||||| || |||||||||| |||||||| | | || | | Sbjct 871161 ATGATGGTCTAATCCCAGCTCACCTTGCCTATTAGTGAATGAACAATTCGATGCCTGGTG 871102 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||| |||| | | ||||| |||||||| ||| || | | |||| Sbjct 871101 AATTCTGCTTCACAATGATGGGAACA-ACAACATCAAAGGATCATAAAACAGCATTGCTA 871043 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||| ||||||| ||||||||||| ||||| | |||||||||||| |||||| Sbjct 871042 TGAATGCTTGGCCACCACAAGCCAGCTATCC---TTGTAACTTTTCTGACACCTC 870991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853703945952