Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq87 201 2e-49
seq174 172 9e-41
>seq87
Length=2996802
Score = 201 bits (222), Expect = 2e-49
Identities = 175/216 (81%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 79 TCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138
||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||
Sbjct 529572 TCACGTTCCCTATTAGTGGGTAAACAATCCAACGCTTGGTGAATTCTGTTTCAAAATGAT 529631
Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198
|| || || ||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 529632 AGTAAT-GCTGACATCGAAGGATCAAAAAGCAATATCGCTATGAATGCTTGGCTGCCACA 529690
Query 199 AGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAA 258
|||||||||||||||||| || ||||||| |||||| || | ||| | | | |
Sbjct 529691 AGCCAGTTATCCCTGTGGCAAGTTTTCTGACACCTCCTGCTTAAAACCCAAAACGTCCGA 529750
Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||||| ||||| |||||| || ||||||||
Sbjct 529751 AAGATCGTGAGGCCCTGCTTTCACAGTCTGTATTCA 529786
>seq174
Length=2284954
Score = 172 bits (190), Expect = 9e-41
Identities = 181/235 (77%), Gaps = 5/235 (2%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | |||||| | | | || | | ||||| |||||||||| ||| ||
Sbjct 871221 TACTAAGCAGGATTACCGTGGCCACAACACATTACCAGTAAGGTAAAACTAGCCTATCCT 871162
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
|||| ||||||| |||||||||| || |||||||||| |||||||| | | || | |
Sbjct 871161 ATGATGGTCTAATCCCAGCTCACCTTGCCTATTAGTGAATGAACAATTCGATGCCTGGTG 871102
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| ||||| |||| | | ||||| |||||||| ||| || | | ||||
Sbjct 871101 AATTCTGCTTCACAATGATGGGAACA-ACAACATCAAAGGATCATAAAACAGCATTGCTA 871043
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
|||| ||||||| ||||||||||| ||||| | |||||||||||| ||||||
Sbjct 871042 TGAATGCTTGGCCACCACAAGCCAGCTATCC---TTGTAACTTTTCTGACACCTC 870991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853703945952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |