Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3826 197 3e-48 seq76 131 3e-28 >seq3826 Length=12179 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 6987 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 7044 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 7045 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 7104 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 7105 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 7164 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 7165 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 7224 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 7225 AAGTCCCTGCCCTTTGTA 7242 >seq76 Length=3169050 Score = 131 bits (144), Expect = 3e-28 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2652980 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2652923 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| | ||||||||||||||||| | || | | | | Sbjct 2652922 ATGCCCTTAGATGTCCGGGGCTGTACGCGCGCTACACTGACTGGCTCAGCATATGCCTAC 2652863 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || || ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2652862 CCTTCGCTGGCAGGGGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTG 2652803 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 |||||||| | | | ||||||||||| | |||| Sbjct 2652802 CAATTATTCCCCATGAACGAGGAATGTCAAGTA 2652770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946428344576