Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15]
81,467 sequences; 2,299,509,015 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq389 316 7e-84
seq1772 266 1e-68
seq157 266 1e-68
seq1765 172 2e-40
seq79 152 2e-34
seq927 125 2e-26
>seq389
Length=1545945
Score = 316 bits (350), Expect = 7e-84
Identities = 223/255 (87%), Gaps = 0/255 (0%)
Strand=Plus/Minus
Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298
|||||||||||||||||||||| ||| |||| | | | ||||||||||||||||||||
Sbjct 1317724 CCCACTTATTCTACACCTCTCATGTCTCCTCACCATGCCAGACTAGAGTCAAGCTCAACA 1317665
Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358
|||||||||||| | ||||| | |||||||||||| |||||||||||||| ||| ||
Sbjct 1317664 TCGTCTTCTTTCCCTGATGATTTCCCCAAGCCCGTTCTCTTGGCTGTGGTTTTGCTGGAC 1317605
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
||||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||||||
Sbjct 1317604 AGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGCAGGTCGCTAATTAGATGAC 1317545
Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478
||||||||||||| |||||||||||||||| |||||||| || ||||||||| ||| |
Sbjct 1317544 GAGGCATTTGGCTGCCTTAAGAGAGTCATACTTACTCCCTCCATTTACCCGCACTTCACT 1317485
Query 479 GAATTTCTTCACTTT 493
|||||||||||||||
Sbjct 1317484 GAATTTCTTCACTTT 1317470
>seq1772
Length=347072
Score = 266 bits (294), Expect = 1e-68
Identities = 226/284 (80%), Gaps = 26/284 (9%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||| || |||||||||||| |||| ||||| | | | ||||||||||||||||||
Sbjct 144208 CTCCCACTCATCCTACACCTCTCATGTCACTTCACCATGCCAGACTAGAGTCAAGCTCAA 144149
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||| ||||||| | ||||||||||| |||||| || |
Sbjct 144148 CAGGGTCGTCTTTCCGTG------------------TTCCCTTGGCTCTGGTTTGGCCGG 144107
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||||||||||||| |||| |||| || || ||||||||||||||
Sbjct 144106 ATAGTAGGTAGGGACAGTGGGGATCTT--------ATTCCTGTGCATCACTAATTAGATG 144055
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||
Sbjct 144054 ACGAGGCATTTGGCTTCCTTAAGAGAGTCATAGTTACTCCCACGATTTACCCAGGCTTCA 143995
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 143994 TTGAATTTCTTCACTTTGACATTTAGAGCACTGACCAGAAATCA 143951
>seq157
Length=2361681
Score = 266 bits (294), Expect = 1e-68
Identities = 190/218 (87%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382
||||| ||| |||||||| |||||||||| || |||||||| ||||||||||||||||||
Sbjct 1503821 GCCAAACCCATTCCCTTGTCTGTGGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATCT 1503762
Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442
| || ||||||||||| || | |||||||||||||| ||||||||| ||||||||||| |
Sbjct 1503761 CCTTCATCCATTCATGTGCATTACTAATTAGATGACCAGGCATTTGACTACCTTAAGAAA 1503702
Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502
|||||||||||||| ||| |||||| || ||| ||||| ||||||||||||||||||||
Sbjct 1503701 GTCATAGTTACTCCTGCCATTTACCTGCACTTCATTGAACTTCTTCACTTTGACATTCAG 1503642
Query 503 AGCACTGGGCAGAAATCACATTGCGTC---AACATCAC 537
|| |||||||||||||||||| ||| ||||||||
Sbjct 1503641 AGTACTGGGCAGAAATCACATCAAGTCAAGAACATCAC 1503604
>seq1765
Length=349063
Score = 172 bits (190), Expect = 2e-40
Identities = 128/150 (85%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| | | ||| | | | ||| ||||||| ||||||
Sbjct 302071 CTCCCACTTATTCTACACCTCTCATGGCTCTTCCCTGTGCCAGACCAGAGTCAGGCTCAA 302012
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||||||||||| |||||||| ||||||| | |||||||||||||||||| || |
Sbjct 302011 CAGGGTCTTCTTTCCCCACTGATTCCACCAAGCCTGGTCCCTTGGCTGTGGTTTCACTGG 301952
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTT 386
|||||| |||||| ||||||||||| |||
Sbjct 301951 GTAGTAGGTAGGGATAGTGGGAATCTTGTT 301922
>seq79
Length=3126960
Score = 152 bits (168), Expect = 2e-34
Identities = 151/193 (78%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA-TCTCGTTAA 388
|| |||| |||||||||| || || || || || |||||||| || | || || |
Sbjct 267134 CCATTCCTTTGGCTGTGGCTTTATCAGTTAAGAGCTAAAGACAGTGGAAAGTATCATTCA 267193
Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448
||||||||||| || ||||||||||| | ||||||||||||||||||||||||| |
Sbjct 267194 TCCATTCATGCATGTTCCTAATTAGATGGTGGAGCATTTGGCTACCTTAAGAGAGTCACA 267253
Query 449 GTTACTCCC-GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507
||||| ||| | ||||| | | |||| ||||||||||||||| |||||||||| |||
Sbjct 267254 GTTACACCCATCAGTTTATCTGGGCTTCAGTGAATTTCTTCACTTAGACATTCAGAACAC 267313
Query 508 TGGGCAGAAATCA 520
| |||| | ||||
Sbjct 267314 TAGGCAAATATCA 267326
>seq927
Length=818964
Score = 125 bits (138), Expect = 2e-26
Identities = 140/195 (72%), Gaps = 33/195 (17%)
Strand=Plus/Plus
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
||||||||||||| || || |||||||||||||||||||||| || || ||||||||| |
Sbjct 464599 TGGCTGTGGTTTCTCTGGACAGTAGATAGGGACAGTGGGAATTTCATTCATCCATTCACG 464658
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458
| | ||| |||||||||| |||||||||
Sbjct 464659 CACATCATTAATTAGATG--------------------------------GTTACTCCCA 464686
Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518
|| ||||||| || | ||||||||||||| ||||||||||||| ||||||||||||
Sbjct 464687 CCTTTTACCCATGC-TCATTGAATTTCTTCATTTTGACATTCAGAATGCTGGGCAGAAAT 464745
Query 519 CACATTGCGTCAACA 533
||||| || ||||||
Sbjct 464746 CACATGGCATCAACA 464760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1633867851616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |