Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailuropoda_20melanoleuca_20[refseq_20GCF_5F000004335.2_202009-12-15] 81,467 sequences; 2,299,509,015 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq389 316 7e-84 seq1772 266 1e-68 seq157 266 1e-68 seq1765 172 2e-40 seq79 152 2e-34 seq927 125 2e-26 >seq389 Length=1545945 Score = 316 bits (350), Expect = 7e-84 Identities = 223/255 (87%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||||||||||||||||| ||| |||| | | | |||||||||||||||||||| Sbjct 1317724 CCCACTTATTCTACACCTCTCATGTCTCCTCACCATGCCAGACTAGAGTCAAGCTCAACA 1317665 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||| | ||||| | |||||||||||| |||||||||||||| ||| || Sbjct 1317664 TCGTCTTCTTTCCCTGATGATTTCCCCAAGCCCGTTCTCTTGGCTGTGGTTTTGCTGGAC 1317605 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||| |||||||||||||||||| ||| |||||||||||| ||| ||||||||||||| Sbjct 1317604 AGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGCAGGTCGCTAATTAGATGAC 1317545 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 ||||||||||||| |||||||||||||||| |||||||| || ||||||||| ||| | Sbjct 1317544 GAGGCATTTGGCTGCCTTAAGAGAGTCATACTTACTCCCTCCATTTACCCGCACTTCACT 1317485 Query 479 GAATTTCTTCACTTT 493 ||||||||||||||| Sbjct 1317484 GAATTTCTTCACTTT 1317470 >seq1772 Length=347072 Score = 266 bits (294), Expect = 1e-68 Identities = 226/284 (80%), Gaps = 26/284 (9%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||| || |||||||||||| |||| ||||| | | | |||||||||||||||||| Sbjct 144208 CTCCCACTCATCCTACACCTCTCATGTCACTTCACCATGCCAGACTAGAGTCAAGCTCAA 144149 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||||||| | ||||||||||| |||||| || | Sbjct 144148 CAGGGTCGTCTTTCCGTG------------------TTCCCTTGGCTCTGGTTTGGCCGG 144107 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||| |||| |||| || || |||||||||||||| Sbjct 144106 ATAGTAGGTAGGGACAGTGGGGATCTT--------ATTCCTGTGCATCACTAATTAGATG 144055 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||| ||||||||||||||||||||||||| | ||||||| |||| Sbjct 144054 ACGAGGCATTTGGCTTCCTTAAGAGAGTCATAGTTACTCCCACGATTTACCCAGGCTTCA 143995 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 143994 TTGAATTTCTTCACTTTGACATTTAGAGCACTGACCAGAAATCA 143951 >seq157 Length=2361681 Score = 266 bits (294), Expect = 1e-68 Identities = 190/218 (87%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 ||||| ||| |||||||| |||||||||| || |||||||| |||||||||||||||||| Sbjct 1503821 GCCAAACCCATTCCCTTGTCTGTGGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATCT 1503762 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 | || ||||||||||| || | |||||||||||||| ||||||||| ||||||||||| | Sbjct 1503761 CCTTCATCCATTCATGTGCATTACTAATTAGATGACCAGGCATTTGACTACCTTAAGAAA 1503702 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 |||||||||||||| ||| |||||| || ||| ||||| |||||||||||||||||||| Sbjct 1503701 GTCATAGTTACTCCTGCCATTTACCTGCACTTCATTGAACTTCTTCACTTTGACATTCAG 1503642 Query 503 AGCACTGGGCAGAAATCACATTGCGTC---AACATCAC 537 || |||||||||||||||||| ||| |||||||| Sbjct 1503641 AGTACTGGGCAGAAATCACATCAAGTCAAGAACATCAC 1503604 >seq1765 Length=349063 Score = 172 bits (190), Expect = 2e-40 Identities = 128/150 (85%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| | | ||| | | | ||| ||||||| |||||| Sbjct 302071 CTCCCACTTATTCTACACCTCTCATGGCTCTTCCCTGTGCCAGACCAGAGTCAGGCTCAA 302012 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| |||||||| ||||||| | |||||||||||||||||| || | Sbjct 302011 CAGGGTCTTCTTTCCCCACTGATTCCACCAAGCCTGGTCCCTTGGCTGTGGTTTCACTGG 301952 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTT 386 |||||| |||||| ||||||||||| ||| Sbjct 301951 GTAGTAGGTAGGGATAGTGGGAATCTTGTT 301922 >seq79 Length=3126960 Score = 152 bits (168), Expect = 2e-34 Identities = 151/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA-TCTCGTTAA 388 || |||| |||||||||| || || || || || |||||||| || | || || | Sbjct 267134 CCATTCCTTTGGCTGTGGCTTTATCAGTTAAGAGCTAAAGACAGTGGAAAGTATCATTCA 267193 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 ||||||||||| || ||||||||||| | ||||||||||||||||||||||||| | Sbjct 267194 TCCATTCATGCATGTTCCTAATTAGATGGTGGAGCATTTGGCTACCTTAAGAGAGTCACA 267253 Query 449 GTTACTCCC-GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 ||||| ||| | ||||| | | |||| ||||||||||||||| |||||||||| ||| Sbjct 267254 GTTACACCCATCAGTTTATCTGGGCTTCAGTGAATTTCTTCACTTAGACATTCAGAACAC 267313 Query 508 TGGGCAGAAATCA 520 | |||| | |||| Sbjct 267314 TAGGCAAATATCA 267326 >seq927 Length=818964 Score = 125 bits (138), Expect = 2e-26 Identities = 140/195 (72%), Gaps = 33/195 (17%) Strand=Plus/Plus Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||| || || |||||||||||||||||||||| || || ||||||||| | Sbjct 464599 TGGCTGTGGTTTCTCTGGACAGTAGATAGGGACAGTGGGAATTTCATTCATCCATTCACG 464658 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 | | ||| |||||||||| ||||||||| Sbjct 464659 CACATCATTAATTAGATG--------------------------------GTTACTCCCA 464686 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 || ||||||| || | ||||||||||||| ||||||||||||| |||||||||||| Sbjct 464687 CCTTTTACCCATGC-TCATTGAATTTCTTCATTTTGACATTCAGAATGCTGGGCAGAAAT 464745 Query 519 CACATTGCGTCAACA 533 ||||| || |||||| Sbjct 464746 CACATGGCATCAACA 464760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633867851616