Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq6098 441 2e-121 seq1848 156 1e-35 seq2390 122 2e-25 >seq6098 Length=1150 Score = 441 bits (488), Expect = 2e-121 Identities = 274/294 (93%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||||| |||||||||| |||| ||| ||||||||||||||| | |||||||||| Sbjct 304 CGCGGGTACACCGCATCTTCACGGCGAATTCGATTTCACTGAGTCTCTGCTGGAGACAGC 245 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 GCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 185 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 184 TTAGGACCGTTATTGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTAC 125 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 124 GCTAACCCCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTT 65 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCT 294 |||||||||||||||||| ||||||||||||||||| |||| |||||||| ||| Sbjct 64 TCGTGTTTGCAGAGTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCT 11 >seq1848 Length=83282 Score = 156 bits (172), Expect = 1e-35 Identities = 186/249 (75%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 33 ATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGG 92 ||||||| ||| || || ||||||| | | ||||| |||||| || || | | Sbjct 49209 ATTTCACCGAGCCTACAGTCGAGACAGTCAAGAGCTGGTTACACCATTCAAGCGGGACAG 49268 Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTAC 152 || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 49269 AATTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 49328 Query 153 CGGGGCTTCGATCAAGAGCTTC-GCGTT--AGC-TAACCCCATCAATTAACCTTCCGGCA 208 | |||||| | || |||| | || || || | ||| | | || |||||| |||| Sbjct 49329 CAGGGCTTAAGTTAAAAGCTGCTGCCTTGCGGCTTGACCTCCTTCTTTGACCTTCTGGCA 49388 Query 209 CCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAA 268 ||||||||| ||| | | ||||| || ||| |||||| | ||||||||||| Sbjct 49389 CCGGGCAGGTGTCGCCACATATACTTCATGTTTGAATTTTGCATATAGCTGTGTTTTTGT 49448 Query 269 TAAACAGTC 277 ||||||||| Sbjct 49449 TAAACAGTC 49457 >seq2390 Length=15461 Score = 122 bits (134), Expect = 2e-25 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||||||||| ||| |||||| ||| | | ||||||||| |||||| | Sbjct 11017 ATCTTCACAGACATTATTATTTCATTGAAATTTTCTTTAAGACAGCGCTCAAATCGTTGC 10958 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 || ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 10957 TCCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 10898 Query 135 GTTACGGCCGCCGTTTA 151 ||| ||||||||||| Sbjct 10897 AATACAGCCGCCGTTTA 10881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260653885888