Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq6098 255 1e-65 seq1848 199 8e-49 seq2390 190 4e-46 >seq6098 Length=1150 Score = 255 bits (282), Expect = 1e-65 Identities = 236/298 (79%), Gaps = 1/298 (0%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | | ||||||| |||||| | | ||||||| |||| Sbjct 298 TACACCGCATCTTCACGGCGAATTCGATTTCACTGAGTCTCTGCTGGAGACAGCGCCCCC 239 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 238 ATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 179 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 ||||||| |||||||||||||||||||||||||| | | |||||| || | ||||| Sbjct 178 CCGTTATTGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTACGCTAAC 119 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||||||||||||||||| ||| ||||||| || ||| || | Sbjct 118 CCCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTCGTGT 59 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 | ||||| || ||||||| |||||||| || |||||| | |||| || ||||| Sbjct 58 TTGCAGAGTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGAGG-CTGTC 2 >seq1848 Length=83282 Score = 199 bits (220), Expect = 8e-49 Identities = 257/347 (74%), Gaps = 17/347 (5%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 ||||||||||| ||| || |||||||| | | ||||| || ||| ||||| | | Sbjct 49209 ATTTCACCGAGCCTACAGTCGAGACAGTCAAGAGCTGGTTACACCATTCAAGCGGGACAG 49268 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 49269 AATTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 49328 Query 147 TGGGGCTTAAGTTCA---CTGCTTCGATTGCTCTAACAGATCC--CCTTAACCTTCCAGC 201 ||||||||||| | ||||| | |||| | ||| | || |||||| || Sbjct 49329 CAGGGCTTAAGTTAAAAGCTGCTGC-CTTGCGGCTTGACCTCCTTCTTTGACCTTCTGGC 49387 Query 202 ACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTG 261 |||||||||| ||| | | ||||| || | || | || ||| | | ||||||||||| Sbjct 49388 ACCGGGCAGGTGTCGCCACATATACTTCATGTTTGAATTTTGCATATAGCTGTGTTTTTG 49447 Query 262 GTAAACAGTCGCTTGGGCCT-ATTCT---CTGCGGCCTGTCA--TA-GACAGGCACCCCT 314 ||||||||| | ||| ||||| ||| | || | | || | ||||| | | Sbjct 49448 TTAAACAGTC----CGCCCTCATTCTTTACTGTGACCCGCGAGTTACCGCGGGCACTCTT 49503 Query 315 TCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTT 361 |||||||||||||| | || | ||||| |||||||||||| ||||| Sbjct 49504 TCTCCCTAAGTTACAGAGTTAATTTGCAGAGTTCCTTAACTGTAGTT 49550 >seq2390 Length=15461 Score = 190 bits (210), Expect = 4e-46 Identities = 252/346 (73%), Gaps = 13/346 (4%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | |||| |||||| || | | || |||||| || ||||||||| | Sbjct 11017 ATCTTCACAGACATTATTATTTCATTGAAATTTTCTTTAAGACAGCGCTCAAATCGTTGC 10958 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 10957 TCCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTATA 10898 Query 129 GTTACGGCCGCCGTTT-ACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 ||| |||||||||| ||| | ||||| | | | || | ||| | | Sbjct 10897 AATACAGCCGCCGTTTAACTAGAGCTTA--TAAAAATATATAATAG---TAATA-TTTTT 10844 Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 ||||| | | || || ||||||| ||||| || |||||||| | | | |||||| Sbjct 10843 ATTAACTTACTAGAACTGGGCAGGAGTCAGTTCTTATACATCATAATTAAATTTAGCAAG 10784 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGG 307 |||||||||||||| |||||||||| ||| ||||| | | | | | | | | | Sbjct 10783 AACCTGTGTTTTTGATAAACAGTCGTTTGAGCCTAGTATAT------TATACTTTAAAAG 10730 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 353 || | || |||||||||||| | | |||||||| |||||||||| Sbjct 10729 CATTCTTTGTCCCTAAGTTACAGAATAATTTTGCCTAGTTCCTTAA 10684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062276878464