Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq39 206 5e-51 seq6208 114 2e-23 seq135 114 2e-23 seq456 87.8 3e-15 seq2390 80.6 5e-13 seq6098 73.4 7e-11 >seq39 Length=8847969 Score = 206 bits (228), Expect = 5e-51 Identities = 187/234 (80%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 2 ACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| | |||||||| | | || || ||||||| |||||||||||||| || || Sbjct 127545 ACTAAGCAGGATTACCATGGCAACAACACGTTATCAGTAAGGTAAAACTAACCTATCCCA 127604 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| ||||||| |||||||||| ||||||||||||| ||||||||| || || | || Sbjct 127605 TGATGGTCTAATCCCAGCTCACCTTCCCTATTAGTGAATGAACAATCTAATGCCTGGTGA 127664 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||| | |||| ||||| || |||||||| | | || Sbjct 127665 ATTCTGCTTCACCATGATAGGAAGAGACAACATTAAAGGACCATAAAGCAACATTGTTAG 127724 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||| ||||||| ||| ||| ||||||||| ||| | ||| |||||| |||||| Sbjct 127725 GAATGCTTGGCCACCAGAAGACAGTTATCCTTGTAGCAACCTTTCTGACACCTC 127778 >seq6208 Length=1111 Score = 114 bits (126), Expect = 2e-23 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||| ||| | || | |||||||||||||||||||||||||||||| Sbjct 89 TACTAGGTGGAATTACTGTTGCGACG-CAATCATCAGTAGGGTAAAACTAACCTGTCTCA 31 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||| Sbjct 30 CGACGGTCTAAACCCAGCTCACGTTCCCTA 1 >seq135 Length=3803353 Score = 114 bits (126), Expect = 2e-23 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 || |||||| | |||||||||||| |||||| |||| ||||||||||||||||||||||| Sbjct 144231 TCTAAAAGCGATGTCGCTATGAACTCTTGGCCGCCATAAGCCAGTTATCCCTGTGGTAAC 144290 Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||||| |||||| || | ||| | || | |||||| | ||||| ||||||| Sbjct 144291 TTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATTGTGAGGCCCCACTTTC 144350 Query 281 ATGGTTTGTAT 291 | || ||||| Sbjct 144351 ACAGTCTGTAT 144361 >seq456 Length=1351208 Score = 87.8 bits (96), Expect = 3e-15 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||| |||||| || | ||| | | Sbjct 711916 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAG 711857 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||||||| |||| | |||||| ||| ||||||| Sbjct 711856 GTCAGAAGGATCGTGAGGCTCCGCTTTCACGGTCTGTATTC 711816 >seq2390 Length=15461 Score = 80.6 bits (88), Expect = 5e-13 Identities = 129/183 (70%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||| |||| ||| |||||||||||||| || ||| ||||||||||| Sbjct 11595 ACCAAACTGTCTTGCGACGTTCTGAACCCAGCTCACGTACCGCTTTATTGGGTGAACAAA 11536 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||||| ||| ||| |||| ||||| | ||| || |||||||||||| | || Sbjct 11535 CCAACCCTTGAAACCTTATTCAGCTTC---AGGATGCGATAAGCCGACATCGAGGTGCCA 11479 Query 164 AAAAGCAACGTCGCTATGAA--CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 || | |||| ||| || | ||| | | ||||| ||||||||| |||||| Sbjct 11478 AACCTCCCCGTCAATATCAAGTCTCTTAAGGGAGATAAGCCTGTTATCCCTAGAGTAACT 11419 Query 222 TTT 224 ||| Sbjct 11418 TTT 11416 >seq6098 Length=1150 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 859 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACC 800 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| ||| || | | |||| || ||||||||||||| | |||| | | Sbjct 799 CTTGGGACCTGCTTCAGCCCCAGGATGA---GATGAGCCGACATCGAGGTGCCAAACACC 743 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| ||| ||||| Sbjct 742 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGAGTACCTTTT 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854300983584