Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq39 206 5e-51
seq6208 114 2e-23
seq135 114 2e-23
seq456 87.8 3e-15
seq2390 80.6 5e-13
seq6098 73.4 7e-11
>seq39
Length=8847969
Score = 206 bits (228), Expect = 5e-51
Identities = 187/234 (80%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 2 ACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||||| | |||||||| | | || || ||||||| |||||||||||||| || ||
Sbjct 127545 ACTAAGCAGGATTACCATGGCAACAACACGTTATCAGTAAGGTAAAACTAACCTATCCCA 127604
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||| ||||||| |||||||||| ||||||||||||| ||||||||| || || | ||
Sbjct 127605 TGATGGTCTAATCCCAGCTCACCTTCCCTATTAGTGAATGAACAATCTAATGCCTGGTGA 127664
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| ||||||||||||| | |||| ||||| || |||||||| | | ||
Sbjct 127665 ATTCTGCTTCACCATGATAGGAAGAGACAACATTAAAGGACCATAAAGCAACATTGTTAG 127724
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
||| ||||||| ||| ||| ||||||||| ||| | ||| |||||| ||||||
Sbjct 127725 GAATGCTTGGCCACCAGAAGACAGTTATCCTTGTAGCAACCTTTCTGACACCTC 127778
>seq6208
Length=1111
Score = 114 bits (126), Expect = 2e-23
Identities = 80/90 (89%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | |||||||| ||| | || | ||||||||||||||||||||||||||||||
Sbjct 89 TACTAGGTGGAATTACTGTTGCGACG-CAATCATCAGTAGGGTAAAACTAACCTGTCTCA 31
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||
Sbjct 30 CGACGGTCTAAACCCAGCTCACGTTCCCTA 1
>seq135
Length=3803353
Score = 114 bits (126), Expect = 2e-23
Identities = 104/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220
|| |||||| | |||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 144231 TCTAAAAGCGATGTCGCTATGAACTCTTGGCCGCCATAAGCCAGTTATCCCTGTGGTAAC 144290
Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280
||||||| |||||| || | ||| | || | |||||| | ||||| |||||||
Sbjct 144291 TTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATTGTGAGGCCCCACTTTC 144350
Query 281 ATGGTTTGTAT 291
| || |||||
Sbjct 144351 ACAGTCTGTAT 144361
>seq456
Length=1351208
Score = 87.8 bits (96), Expect = 3e-15
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252
||||||||||||||||||||||||||||||||||| |||||| || | ||| | |
Sbjct 711916 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAG 711857
Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| | |||||||| |||| | |||||| ||| |||||||
Sbjct 711856 GTCAGAAGGATCGTGAGGCTCCGCTTTCACGGTCTGTATTC 711816
>seq2390
Length=15461
Score = 80.6 bits (88), Expect = 5e-13
Identities = 129/183 (70%), Gaps = 8/183 (4%)
Strand=Plus/Minus
Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106
|| || |||||| |||| ||| |||||||||||||| || ||| |||||||||||
Sbjct 11595 ACCAAACTGTCTTGCGACGTTCTGAACCCAGCTCACGTACCGCTTTATTGGGTGAACAAA 11536
Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163
||||| ||| ||| |||| ||||| | ||| || |||||||||||| | ||
Sbjct 11535 CCAACCCTTGAAACCTTATTCAGCTTC---AGGATGCGATAAGCCGACATCGAGGTGCCA 11479
Query 164 AAAAGCAACGTCGCTATGAA--CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221
|| | |||| ||| || | ||| | | ||||| ||||||||| ||||||
Sbjct 11478 AACCTCCCCGTCAATATCAAGTCTCTTAAGGGAGATAAGCCTGTTATCCCTAGAGTAACT 11419
Query 222 TTT 224
|||
Sbjct 11418 TTT 11416
>seq6098
Length=1150
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| || ||||| | ||
Sbjct 859 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACC 800
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| ||| || | | |||| || ||||||||||||| | |||| | |
Sbjct 799 CTTGGGACCTGCTTCAGCCCCAGGATGA---GATGAGCCGACATCGAGGTGCCAAACACC 743
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||| ||||| | | |||| |||||||| ||| |||||
Sbjct 742 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGAGTACCTTTT 688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854300983584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |