Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq6098 223 7e-56 seq6520 168 1e-39 seq1848 163 6e-38 >seq6098 Length=1150 Score = 223 bits (246), Expect = 7e-56 Identities = 232/298 (78%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAAC-CGGACGACGTATAA 102 ||||||| ||| |||| |||| || ||||| ||||||| | | | ||| || Sbjct 412 GGAGCCGTCCTTGAAATACCACCCTGGTAATATTGAGGTTCTAACTCTGTCC-CGT-TAT 469 Query 103 CCGTTGACG-GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGT 161 ||| |||| |||| |||| | ||| |||||||||||||||||| ||||| ||||||| Sbjct 470 CCGG-GACGAGGACCATGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGT 528 Query 162 AACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGC 221 |||||||| | | ||| | | |||||| ||| ||||| || ||| | ||| |||||| Sbjct 529 AACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCGTAGAGTATAAAGGC 588 Query 222 AAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGA 281 ||||| | | || ||||||| |||| |||||| |||||| |||||||| || |||| ||| Sbjct 589 AAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAAGTAGGTCTTAGTGA 648 Query 282 TCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| ||| ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 649 TCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 706 >seq6520 Length=1017 Score = 168 bits (186), Expect = 1e-39 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||| || ||||||||||||||||||||| |||||| ||| |||||||||||| Sbjct 39 GGACAGTGTTAGGTGGGCAGTTTGACTGGGGCGGTTGCCTCCTAAAATGTAACGGAGGCG 98 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||||| ||| || ||| | ||||||| | ||| | || | || | | | ||| Sbjct 99 CGCAAAGGTACACTTAGCACGTATGGAAATCGTGCAGAAAGGGTAATACTATATGTGTGC 158 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||| ||||| || |||||| | || | | |||| | || || |||||||| || Sbjct 159 TTGATTGCGAGACAGACAAGTCGAACAAGTAAGAAATTAGGCTATAGTGATCCGGTAGTT 218 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||||| ||| |||||| ||||||||||||||| || |||||| Sbjct 219 CTGAATGGAAGGGCTATCGCTCAACGGATAAAAGCTACTCTAGGGATA 266 >seq1848 Length=83282 Score = 163 bits (180), Expect = 6e-38 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||| || ||||||||||||||||||||| |||||| ||| ||||||||||||| Sbjct 49001 GGACAGTGTTAGGTGGGCAGTTTGACTGGGGCGGTTGCCTCCTAAAAAGTAACGGAGGCG 48942 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||||| ||| || ||| | ||||||| | || | || | || | | | ||| Sbjct 48941 CGCAAAGGTACACTTAGCGCGAATGGAAATCGCGCAAAAAGGGTAATACTATATGTGTGC 48882 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||| || || || |||||| | || | | |||| | || || |||||||| || Sbjct 48881 TTGATTGTGAGACAGACAAGTCGACCAAGTAAGAAATTAGGCTATAGTGATCCGGTAGTT 48822 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||||| ||| |||||| ||||||||||||||| || |||||| Sbjct 48821 CTGAATGGAAGGGCTATCGCTCAACGGATAAAAGCTACTCTAGGGATA 48774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982286149664