Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq6098 131 2e-28 seq1848 91.5 2e-16 seq2390 89.7 6e-16 >seq6098 Length=1150 Score = 131 bits (144), Expect = 2e-28 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | | ||||||||| Sbjct 323 CGGGGTCTTTCCGTCTAGCCGCGGGTACACCGCATCTTCACGGCGAATTCGATTTCACTG 264 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || | | || |||||| || ||||||||||||||||||||||||| Sbjct 263 AG-TCTCTGCTGGAGACAGCGCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACC 205 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTT 201 |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 204 CGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACTGGGGCTT 145 Query 202 C 202 | Sbjct 144 C 144 >seq1848 Length=83282 Score = 91.5 bits (100), Expect = 2e-16 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||| | |||||||| |||| | | ||||||| || | ||||||| ||| Sbjct 49160 GGGTCTGTCCGTCCCATAGCGGCAAGAGAGTGTCTTCACTCTCACCAGGATTTCACCGAG 49219 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | || || ||||||| |||||||||| || || | ||| ||||| || Sbjct 49220 CCTACAGTCGAGACAGTCAAGAGCTGGTTACACCATTCAAGCGGGACAGAATTTACCTGA 49279 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 49280 CAAGGAATTTCGCTACCTTAGGACCGTTA 49308 >seq2390 Length=15461 Score = 89.7 bits (98), Expect = 6e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 10956 CCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 10900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547138566711