Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq9384 168 1e-39 >seq9384 Length=646 Score = 168 bits (186), Expect = 1e-39 Identities = 211/285 (74%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59 ||||||||||| |||||||||||| ||| ||||| || | |||||| ||| |||||| Sbjct 62 CCCACGCTTTCAAGCCTCAGCGTCAATTA-TGTCCTAGATACTCGCCTTAGCCTCTGGTG 120 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC--GATTGCCTCTCCAG 117 |||||| |||||||||||||| |||||||||||| ||||||| || ||| | | Sbjct 121 TTCCTCAATATATCTACGCATTCCACCGCTACACATTGAATTCCAGTATCTCCTAACTA- 179 Query 118 CACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 | || ||| | | |||| | || | | ||| ||| | ||||||| | Sbjct 180 -ATTCTAGACAGGCGATTTCTATCACAAACAACTTGTTAAGCAAGTGCCTTTCACAATAG 238 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 | ||| |||||||| | ||||||| |||||||||||||||||| ||| | |||| Sbjct 239 ATCGACCTGTCCGCCTACGCTTCCTTTACGCCCAATAAATCCGGATAATGCTCGTGACCT 298 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 | || ||||||| ||||||||||| |||||||| || ||||||| Sbjct 299 ATGTTTTACCGCAGCTGCTGGCACATAGTTAGCTGTCACTTATTC 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828706951919