Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq6098 141 9e-32 seq6520 96.9 3e-18 seq1848 80.6 3e-13 >seq6098 Length=1150 Score = 141 bits (156), Expect = 9e-32 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 683 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 624 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || ||||||||| |||| |||| |||| || ||| | | ||| || Sbjct 623 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 564 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | ||| |||||||| ||||||||||| Sbjct 563 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 528 >seq6520 Length=1017 Score = 96.9 bits (106), Expect = 3e-18 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||| ||||||||||||||||| ||||||||||||| ||| |||| || || Sbjct 243 GTTGAGCGATAGCCCTTCCATTCAGAACTACCGGATCACTATAGCCTAATTTCTTACTTG 184 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||| ||| ||||||| |||||| | ||| ||| | || | |||||| || Sbjct 183 TTCGACTTGTCTGTCTCGCAATCAAGCACACATATAGTATTACCCTTTCTGCACGATTTC 124 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | |||| | || ||||| | || ||||||||| Sbjct 123 CATACGTGCTAAGTGTACCTTTGCGCGCCTCCGTTA 88 >seq1848 Length=83282 Score = 80.6 bits (88), Expect = 3e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||| ||||||||||||||||| ||||||||||||| ||| |||| || || Sbjct 48797 GTTGAGCGATAGCCCTTCCATTCAGAACTACCGGATCACTATAGCCTAATTTCTTACTTG 48856 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGC 110 |||| ||| |||| || |||||| Sbjct 48857 GTCGACTTGTCTGTCTCACAATCAAGC 48883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473546829668