Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq6098 309 5e-82
seq1848 219 7e-55
seq2390 127 3e-27
seq6520 114 2e-23
>seq6098
Length=1150
Score = 309 bits (342), Expect = 5e-82
Identities = 233/274 (85%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| |||||| |||||||||| |||||| ||||||||||| ||| ||||| ||| |
Sbjct 1030 GAGGTAGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACATAGCTACCCGG 971
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| |||| |||| ||||| ||| ||||||||||| ||||| | |||||||||||||
Sbjct 970 CGATGCCACTGGCGTGACAACCGGTACACCAGAGGTTCGTCCACTCTGGTCCTCTCGTAC 911
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181
|| | ||| ||||||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 910 TAGGAGCAGATCCTCTCAAATTTCCAACGCCCACGGTAGATAGGGACCGAACTGTCTCAC 851
Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
|||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 850 GACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 791
Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
| ||||||||||||||||||| ||||||||||||
Sbjct 790 TGCTTCAGCCCCAGGATGAGATGAGCCGACATCG 757
>seq1848
Length=83282
Score = 219 bits (242), Expect = 7e-55
Identities = 204/259 (79%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76
||||||||| |||||| ||||| |||| ||||| || |||| |||| ||||
Sbjct 48465 CTTAGATGCTTTCAGCGTTTATCTAATCCACACTTATCTATTCAGCAATGCTTCTGGCGA 48524
Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136
||||||| | || ||| ||| ||| ||| ||||||||||||||||| | | ||| |
Sbjct 48525 AACAACTGATACAACAGCGGTGTGTTCATTCCGGTCCTCTCGTACTAGGAATGAATCCCC 48584
Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196
||||||||||| | |||| || |||||||||| | ||||||| ||||| | ||||||||
Sbjct 48585 TCAAATTTCCTTCAGCCACTACAGATAGGGACCAACCTGTCTCACGACGGTTTGAACCCA 48644
Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256
||| ||| || |||||| ||||||||||| ||||||||||| || ||||| |||||||
Sbjct 48645 ACTCACGTATCTTTTTAATCGGCGAACAGCCGAACCCTTGGGAGCTGCTTCACCCCCAGG 48704
Query 257 ATGAGACGAGCCGACATCG 275
|| ||| ||| ||||||||
Sbjct 48705 ATAAGATGAGTCGACATCG 48723
>seq2390
Length=15461
Score = 127 bits (140), Expect = 3e-27
Identities = 99/118 (84%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217
|||||| ||||| |||||||| ||||||||||||||||||||| ||| || ||||| |||
Sbjct 11604 CGGATATGGACCAAACTGTCTTGCGACGTTCTGAACCCAGCTCACGTACCGCTTTATTGG 11545
Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
| ||||| |||||||||| |||| |||||| ||||||| || |||||||||||
Sbjct 11544 GTGAACAAACCAACCCTTGAAACCTTATTCAGCTTCAGGATGCGATAAGCCGACATCG 11487
>seq6520
Length=1017
Score = 114 bits (126), Expect = 2e-23
Identities = 87/103 (84%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 173 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 232
||||||| ||||| | |||||||| ||| ||| || |||||| ||||||||||| ||||
Sbjct 419 CTGTCTCACGACGGTTTGAACCCAACTCACGTATCTTTTTAATCGGCGAACAGCCGAACC 360
Query 233 CTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||||||| || ||||| ||||||||| ||| ||| ||||||||
Sbjct 359 CTTGGGAGCTGCTTCACCCCCAGGATAAGATGAGTCGACATCG 317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780712340804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |