Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq6098 309 5e-82 seq1848 219 7e-55 seq2390 127 3e-27 seq6520 114 2e-23 >seq6098 Length=1150 Score = 309 bits (342), Expect = 5e-82 Identities = 233/274 (85%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| |||||||||| |||||| ||||||||||| ||| ||||| ||| | Sbjct 1030 GAGGTAGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACATAGCTACCCGG 971 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| ||| ||||||||||| ||||| | ||||||||||||| Sbjct 970 CGATGCCACTGGCGTGACAACCGGTACACCAGAGGTTCGTCCACTCTGGTCCTCTCGTAC 911 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| ||||||||||||||| ||||||||| |||||||||||||||||||| | Sbjct 910 TAGGAGCAGATCCTCTCAAATTTCCAACGCCCACGGTAGATAGGGACCGAACTGTCTCAC 851 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 850 GACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACC 791 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||||||||||||||||| |||||||||||| Sbjct 790 TGCTTCAGCCCCAGGATGAGATGAGCCGACATCG 757 >seq1848 Length=83282 Score = 219 bits (242), Expect = 7e-55 Identities = 204/259 (79%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| |||||| ||||| |||| ||||| || |||| |||| |||| Sbjct 48465 CTTAGATGCTTTCAGCGTTTATCTAATCCACACTTATCTATTCAGCAATGCTTCTGGCGA 48524 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||||| | || ||| ||| ||| ||| ||||||||||||||||| | | ||| | Sbjct 48525 AACAACTGATACAACAGCGGTGTGTTCATTCCGGTCCTCTCGTACTAGGAATGAATCCCC 48584 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 ||||||||||| | |||| || |||||||||| | ||||||| ||||| | |||||||| Sbjct 48585 TCAAATTTCCTTCAGCCACTACAGATAGGGACCAACCTGTCTCACGACGGTTTGAACCCA 48644 Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 ||| ||| || |||||| ||||||||||| ||||||||||| || ||||| ||||||| Sbjct 48645 ACTCACGTATCTTTTTAATCGGCGAACAGCCGAACCCTTGGGAGCTGCTTCACCCCCAGG 48704 Query 257 ATGAGACGAGCCGACATCG 275 || ||| ||| |||||||| Sbjct 48705 ATAAGATGAGTCGACATCG 48723 >seq2390 Length=15461 Score = 127 bits (140), Expect = 3e-27 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||| |||||||| ||||||||||||||||||||| ||| || ||||| ||| Sbjct 11604 CGGATATGGACCAAACTGTCTTGCGACGTTCTGAACCCAGCTCACGTACCGCTTTATTGG 11545 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||| |||||||||| |||| |||||| ||||||| || ||||||||||| Sbjct 11544 GTGAACAAACCAACCCTTGAAACCTTATTCAGCTTCAGGATGCGATAAGCCGACATCG 11487 >seq6520 Length=1017 Score = 114 bits (126), Expect = 2e-23 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 173 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 232 ||||||| ||||| | |||||||| ||| ||| || |||||| ||||||||||| |||| Sbjct 419 CTGTCTCACGACGGTTTGAACCCAACTCACGTATCTTTTTAATCGGCGAACAGCCGAACC 360 Query 233 CTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| || ||||| ||||||||| ||| ||| |||||||| Sbjct 359 CTTGGGAGCTGCTTCACCCCCAGGATAAGATGAGTCGACATCG 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780712340804