Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq167 338 2e-90 seq1140 331 3e-88 seq1137 306 1e-80 seq16 264 4e-68 seq228 232 2e-58 seq1518 224 3e-56 seq367 217 5e-54 seq997 194 5e-47 seq491 178 4e-42 seq530 150 6e-34 seq322 132 2e-28 >seq167 Length=3366568 Score = 338 bits (374), Expect = 2e-90 Identities = 215/232 (93%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 302 TCTTCTTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 2542015 TCTTCTGTCCCCTGCTGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAG 2542074 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 ||| |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 2542075 TAGGTAGGGAAGGTGGGAATCTCGTTCATCCATTCATGCGTGTCACTAATTAGATGACGA 2542134 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||| Sbjct 2542135 GGCATTTGGCTACCTTAAGAGAGTCATAGCTACGCCCGCCGTTCACCCGCGCTTCATTGA 2542194 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||||||||||||||||||||||||||||||||||||| ||||| | |||||| Sbjct 2542195 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAACCACATCGTGTCAAC 2542246 >seq1140 Length=374558 Score = 331 bits (366), Expect = 3e-88 Identities = 204/218 (94%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | ||||||| |||||||||| Sbjct 117001 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGACTCAAGCTCAA 117060 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 117061 CAGGGTCTTCTTTCCCCACTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 117120 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 117121 ATAGTAGGTAGGGACAGTGGGAATCTCCTTCATCCATTCATGCGCGTCACTAATTAGATG 117180 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||||||||||||||||||||||||||||||||||| Sbjct 117181 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 117218 >seq1137 Length=333159 Score = 306 bits (338), Expect = 1e-80 Identities = 195/212 (92%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | | |||||||||||||||||| Sbjct 233569 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGCTCAA 233628 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| | Sbjct 233629 CAGGGTCTTCTTTCCCTGCTAATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGG 233688 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| |||||||| Sbjct 233689 ATAGTAGGTAGGAACAGTGGGAATCTCGTTCATCCATTTATGCGCGTCACTGATTAGATG 233748 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||||||||||||||||||||||| ||||||| Sbjct 233749 ACGAGGCATTTGGCTACCTTAAGACAGTCATA 233780 >seq16 Length=8410389 Score = 264 bits (292), Expect = 4e-68 Identities = 152/156 (97%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1271365 AATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 1271306 Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1271305 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 1271246 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||| ||||||||| Sbjct 1271245 TTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1271210 >seq228 Length=2737486 Score = 232 bits (256), Expect = 2e-58 Identities = 139/146 (95%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 |||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||| | Sbjct 10152 CCCGTTCCCTTGGCTGTGGTTTTGCTGGATGGTAGGCAGGGACAGTGGGAATCTCGTTCA 10093 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10092 TCCATTCATGCGTGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 10033 Query 449 GTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||| Sbjct 10032 GTTACTCCCGCCGTTTACCCGCGCTT 10007 >seq1518 Length=343169 Score = 224 bits (248), Expect = 3e-56 Identities = 230/302 (76%), Gaps = 30/302 (10%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||| ||||||||||||||| |||| ||||| | | | ||||||||||||| ||| Sbjct 215662 CTCCCACTCATTCTACACCTCTCATGTCACTTCACCATGCCAGACTAGAGTCAAGTTCAG 215721 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||||||| || |||| ||||| ||| |||| ||| | Sbjct 215722 CAGGGTCATCTTTCC------AT------------GTTCTCTTGGGTGTAGTTTTGCTGG 215763 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA---G 413 | | ||| ||||||||| |||||| | ||| | || | |||||||||| | Sbjct 215764 ACAATAGGTAGGGACAGCGGGAATTTTGTT--------CCTGTACATCACTAATTATTAG 215815 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 ||| || |||||||||||||||||||| ||| |||||||||| | ||||||| ||| Sbjct 215816 ATGGTGATGCATTTGGCTACCTTAAGAGCGTCGTAGTTACTCCTGTGATTTACCCAGGCT 215875 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | | ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| Sbjct 215876 TCAT-GAATTTCTTCACTTTGACATTTAGAGCACTGGCCAGAAATCACATTATGTCAACA 215934 Query 534 TC 535 || Sbjct 215935 TC 215936 Score = 224 bits (248), Expect = 3e-56 Identities = 230/302 (76%), Gaps = 30/302 (10%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||| ||||||||||||||| |||| ||||| | | | ||||||||||||| ||| Sbjct 220433 CTCCCACTCATTCTACACCTCTCATGTCACTTCACCATGCCAGACTAGAGTCAAGTTCAG 220492 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||||||| || |||| ||||| ||| |||| ||| | Sbjct 220493 CAGGGTCATCTTTCC------AT------------GTTCTCTTGGGTGTAGTTTTGCTGG 220534 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA---G 413 | | ||| ||||||||| |||||| | ||| | || | |||||||||| | Sbjct 220535 ACAATAGGTAGGGACAGCGGGAATTTTGTT--------CCTGTACATCACTAATTATTAG 220586 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 ||| || |||||||||||||||||||| ||| |||||||||| | ||||||| ||| Sbjct 220587 ATGGTGATGCATTTGGCTACCTTAAGAGCGTCGTAGTTACTCCTGTGATTTACCCAGGCT 220646 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | | ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| Sbjct 220647 TCAT-GAATTTCTTCACTTTGACATTTAGAGCACTGGCCAGAAATCACATTATGTCAACA 220705 Query 534 TC 535 || Sbjct 220706 TC 220707 >seq367 Length=1728253 Score = 217 bits (240), Expect = 5e-54 Identities = 182/223 (82%), Gaps = 20/223 (9%) Strand=Plus/Plus Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 |||||||||| |||||||||| || | |||||| |||||||||| ||||||||||| ||| Sbjct 1294761 CGTTCCCTTGTCTGTGGTTTCTCTGGGTAGTAGGTAGGGACAGTTGGAATCTCGTTCATC 1294820 Query 391 CATTCATGCGCGTCACTA-------------ATTAGATGACGAGGCATTTGGCTACCTTA 437 |||||||| || | |||| ||||||||| || |||||||||||||||| Sbjct 1294821 CATTCATGTGCATTACTAATGTGCATTACTAATTAGATGATGAAGCATTTGGCTACCTTA 1294880 Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 |||||||||| |||||||| ||| |||||| |||||| ||||| ||||||||||||| Sbjct 1294881 AGAGAGTCATTGTTACTCCTGCCATTTACCTGCGCTTCATTGAA---CTTCACTTTGACA 1294937 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTC---AACATCAC 537 || ||||||| ||||||||||||||||| || |||||||| Sbjct 1294938 TT-AGAGCACCTGGCAGAAATCACATTGCATCAAGAACATCAC 1294979 >seq997 Length=444033 Score = 194 bits (214), Expect = 5e-47 Identities = 162/197 (82%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 ||||||| ||| ||| || || ||||| |||||| |||||||||||| | ||||||||| Sbjct 230521 CTTGGCTATGGCTTCTCTGGACAGTAGGTAGGGAGAGTGGGAATCTCATCCATCCATTCA 230462 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 || | ||| |||| |||||| ||||||||||||||||||| | |||||||||||||| Sbjct 230461 TGTACATCATTAATAGGATGACAAGGCATTTGGCTACCTTAAAAAAGTCATAGTTACTCT 230402 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 ||| ||||||| || | ||||||||||||| ||||||||||||| ||||||||| Sbjct 230401 AGCCATTTACCCATGC-TCATTGAATTTCTTCATTTTGACATTCAGAATGGTGGGCAGAA 230343 Query 517 ATCACATTGCGTCAACA 533 ||| ||| | ||||||| Sbjct 230342 ATCCCATGGTGTCAACA 230326 >seq491 Length=1622017 Score = 178 bits (196), Expect = 4e-42 Identities = 182/233 (78%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||| |||||||| || | |||| ||||||| |||||||||||||| |||| Sbjct 1039048 TCAACAG--TCTTCTTTGACCACAGATTTTTCCAAGCCA-TTCCCTTGGCTGTGATTTCA 1038992 Query 353 CTAGATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAATT 411 | ||| ||| || ||| |||| || | || || |||||||||||| ||| |||||| Sbjct 1038991 TCAAATAATAGCTAAAGACCGTGGAAAATATCATTCATCCATTCATGCATGTCCCTAATT 1038932 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGC 470 ||||| | ||| |||||| |||||||||||| ||||||| ||| | |||| | | Sbjct 1038931 AGATGGTGGAACATCTGGCTATCTTAAGAGAGTCTTAGTTACACCCATCAATTTATCTGG 1038872 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||| |||||||||||||||||||||||||| |||| |||| ||||||||| Sbjct 1038871 GCTTCACTGAATTTCTTCACTTTGACATTCAGAACACTAGGCAAAAATCACAT 1038819 >seq530 Length=1149693 Score = 150 bits (166), Expect = 6e-34 Identities = 124/150 (83%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||| ||| |||| ||| ||| | | | | |||||||||||| |||| Sbjct 378301 CTCCCACTTATTCTATACCGCTCATGTCTCTTCCCCATGCCAGACTAGAGTCAAACTCA- 378359 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| ||||||||||| |||||||| |||||||||| || ||||||||||||||| || | Sbjct 378360 CAGAATCTTCTTTCCCAGCTGATTCTGCCAAGCCCGGTCTCTTGGCTGTGGTTTCTCTGG 378419 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTT 386 ||||| | |||| | |||||||||| ||| Sbjct 378420 ATAGTGGGTAGGTATTGTGGGAATCTTGTT 378449 >seq322 Length=1988940 Score = 132 bits (146), Expect = 2e-28 Identities = 136/174 (78%), Gaps = 8/174 (5%) Strand=Plus/Plus Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 ||| || ||| ||| |||| ||| |||||||| |||| ||||||||| || ||||| Sbjct 1629708 TTCACTGGATGCTAGGTAGGAACAATGGGAATCCTGTTA-TCCATTCATAGGCATCACTG 1629766 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT-TACC 467 |||||||| |||| ||||||||||| | | |||| || ||||||| || |||| Sbjct 1629767 TTTAGATGATGAGGTATTTGGCTACCCT--GCGAGTTATGGTTACTCT----GTGATACC 1629820 Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 | |||| ||||||||||| ||||||||||| ||||||||||||||| |||| Sbjct 1629821 CTTGCTTCATTGAATTTCTTTACTTTGACATTGGGAGCACTGGGCAGAAGTCAC 1629874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635010496672