Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq167 338 2e-90
seq1140 331 3e-88
seq1137 306 1e-80
seq16 264 4e-68
seq228 232 2e-58
seq1518 224 3e-56
seq367 217 5e-54
seq997 194 5e-47
seq491 178 4e-42
seq530 150 6e-34
seq322 132 2e-28
>seq167
Length=3366568
Score = 338 bits (374), Expect = 2e-90
Identities = 215/232 (93%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 302 TCTTCTTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360
|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 2542015 TCTTCTGTCCCCTGCTGATTCCACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAG 2542074
Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420
||| |||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 2542075 TAGGTAGGGAAGGTGGGAATCTCGTTCATCCATTCATGCGTGTCACTAATTAGATGACGA 2542134
Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480
||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||
Sbjct 2542135 GGCATTTGGCTACCTTAAGAGAGTCATAGCTACGCCCGCCGTTCACCCGCGCTTCATTGA 2542194
Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532
||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 2542195 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAACCACATCGTGTCAAC 2542246
>seq1140
Length=374558
Score = 331 bits (366), Expect = 3e-88
Identities = 204/218 (94%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| ||||| | | ||||||| ||||||||||
Sbjct 117001 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGACTCAAGCTCAA 117060
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 117061 CAGGGTCTTCTTTCCCCACTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 117120
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 117121 ATAGTAGGTAGGGACAGTGGGAATCTCCTTCATCCATTCATGCGCGTCACTAATTAGATG 117180
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454
||||||||||||||||||||||||||||||||||||||
Sbjct 117181 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 117218
>seq1137
Length=333159
Score = 306 bits (338), Expect = 1e-80
Identities = 195/212 (92%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| ||||| | | | ||||||||||||||||||
Sbjct 233569 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGCTCAA 233628
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 233629 CAGGGTCTTCTTTCCCTGCTAATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGG 233688
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||| ||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 233689 ATAGTAGGTAGGAACAGTGGGAATCTCGTTCATCCATTTATGCGCGTCACTGATTAGATG 233748
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448
|||||||||||||||||||||||| |||||||
Sbjct 233749 ACGAGGCATTTGGCTACCTTAAGACAGTCATA 233780
>seq16
Length=8410389
Score = 264 bits (292), Expect = 4e-68
Identities = 152/156 (97%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271365 AATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 1271306
Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1271305 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 1271246
Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||| |||||||||
Sbjct 1271245 TTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1271210
>seq228
Length=2737486
Score = 232 bits (256), Expect = 2e-58
Identities = 139/146 (95%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388
|||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||| |
Sbjct 10152 CCCGTTCCCTTGGCTGTGGTTTTGCTGGATGGTAGGCAGGGACAGTGGGAATCTCGTTCA 10093
Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10092 TCCATTCATGCGTGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 10033
Query 449 GTTACTCCCGCCGTTTACCCGCGCTT 474
||||||||||||||||||||||||||
Sbjct 10032 GTTACTCCCGCCGTTTACCCGCGCTT 10007
>seq1518
Length=343169
Score = 224 bits (248), Expect = 3e-56
Identities = 230/302 (76%), Gaps = 30/302 (10%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||| ||||||||||||||| |||| ||||| | | | ||||||||||||| |||
Sbjct 215662 CTCCCACTCATTCTACACCTCTCATGTCACTTCACCATGCCAGACTAGAGTCAAGTTCAG 215721
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||| ||||||| || |||| ||||| ||| |||| ||| |
Sbjct 215722 CAGGGTCATCTTTCC------AT------------GTTCTCTTGGGTGTAGTTTTGCTGG 215763
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA---G 413
| | ||| ||||||||| |||||| | ||| | || | |||||||||| |
Sbjct 215764 ACAATAGGTAGGGACAGCGGGAATTTTGTT--------CCTGTACATCACTAATTATTAG 215815
Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473
||| || |||||||||||||||||||| ||| |||||||||| | ||||||| |||
Sbjct 215816 ATGGTGATGCATTTGGCTACCTTAAGAGCGTCGTAGTTACTCCTGTGATTTACCCAGGCT 215875
Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
| | ||||||||||||||||||||| |||||||||| ||||||||||||| |||||||
Sbjct 215876 TCAT-GAATTTCTTCACTTTGACATTTAGAGCACTGGCCAGAAATCACATTATGTCAACA 215934
Query 534 TC 535
||
Sbjct 215935 TC 215936
Score = 224 bits (248), Expect = 3e-56
Identities = 230/302 (76%), Gaps = 30/302 (10%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||| ||||||||||||||| |||| ||||| | | | ||||||||||||| |||
Sbjct 220433 CTCCCACTCATTCTACACCTCTCATGTCACTTCACCATGCCAGACTAGAGTCAAGTTCAG 220492
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||| ||||||| || |||| ||||| ||| |||| ||| |
Sbjct 220493 CAGGGTCATCTTTCC------AT------------GTTCTCTTGGGTGTAGTTTTGCTGG 220534
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA---G 413
| | ||| ||||||||| |||||| | ||| | || | |||||||||| |
Sbjct 220535 ACAATAGGTAGGGACAGCGGGAATTTTGTT--------CCTGTACATCACTAATTATTAG 220586
Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473
||| || |||||||||||||||||||| ||| |||||||||| | ||||||| |||
Sbjct 220587 ATGGTGATGCATTTGGCTACCTTAAGAGCGTCGTAGTTACTCCTGTGATTTACCCAGGCT 220646
Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
| | ||||||||||||||||||||| |||||||||| ||||||||||||| |||||||
Sbjct 220647 TCAT-GAATTTCTTCACTTTGACATTTAGAGCACTGGCCAGAAATCACATTATGTCAACA 220705
Query 534 TC 535
||
Sbjct 220706 TC 220707
>seq367
Length=1728253
Score = 217 bits (240), Expect = 5e-54
Identities = 182/223 (82%), Gaps = 20/223 (9%)
Strand=Plus/Plus
Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390
|||||||||| |||||||||| || | |||||| |||||||||| ||||||||||| |||
Sbjct 1294761 CGTTCCCTTGTCTGTGGTTTCTCTGGGTAGTAGGTAGGGACAGTTGGAATCTCGTTCATC 1294820
Query 391 CATTCATGCGCGTCACTA-------------ATTAGATGACGAGGCATTTGGCTACCTTA 437
|||||||| || | |||| ||||||||| || ||||||||||||||||
Sbjct 1294821 CATTCATGTGCATTACTAATGTGCATTACTAATTAGATGATGAAGCATTTGGCTACCTTA 1294880
Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497
|||||||||| |||||||| ||| |||||| |||||| ||||| |||||||||||||
Sbjct 1294881 AGAGAGTCATTGTTACTCCTGCCATTTACCTGCGCTTCATTGAA---CTTCACTTTGACA 1294937
Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTC---AACATCAC 537
|| ||||||| ||||||||||||||||| || ||||||||
Sbjct 1294938 TT-AGAGCACCTGGCAGAAATCACATTGCATCAAGAACATCAC 1294979
>seq997
Length=444033
Score = 194 bits (214), Expect = 5e-47
Identities = 162/197 (82%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396
||||||| ||| ||| || || ||||| |||||| |||||||||||| | |||||||||
Sbjct 230521 CTTGGCTATGGCTTCTCTGGACAGTAGGTAGGGAGAGTGGGAATCTCATCCATCCATTCA 230462
Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456
|| | ||| |||| |||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 230461 TGTACATCATTAATAGGATGACAAGGCATTTGGCTACCTTAAAAAAGTCATAGTTACTCT 230402
Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516
||| ||||||| || | ||||||||||||| ||||||||||||| |||||||||
Sbjct 230401 AGCCATTTACCCATGC-TCATTGAATTTCTTCATTTTGACATTCAGAATGGTGGGCAGAA 230343
Query 517 ATCACATTGCGTCAACA 533
||| ||| | |||||||
Sbjct 230342 ATCCCATGGTGTCAACA 230326
>seq491
Length=1622017
Score = 178 bits (196), Expect = 4e-42
Identities = 182/233 (78%), Gaps = 5/233 (2%)
Strand=Plus/Minus
Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352
||||||| |||||||| || | |||| ||||||| |||||||||||||| ||||
Sbjct 1039048 TCAACAG--TCTTCTTTGACCACAGATTTTTCCAAGCCA-TTCCCTTGGCTGTGATTTCA 1038992
Query 353 CTAGATAGTAGATAGGGACAGTGGGAA-TCTCGTTAATCCATTCATGCGCGTCACTAATT 411
| ||| ||| || ||| |||| || | || || |||||||||||| ||| ||||||
Sbjct 1038991 TCAAATAATAGCTAAAGACCGTGGAAAATATCATTCATCCATTCATGCATGTCCCTAATT 1038932
Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGC 470
||||| | ||| |||||| |||||||||||| ||||||| ||| | |||| | |
Sbjct 1038931 AGATGGTGGAACATCTGGCTATCTTAAGAGAGTCTTAGTTACACCCATCAATTTATCTGG 1038872
Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523
|||| |||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct 1038871 GCTTCACTGAATTTCTTCACTTTGACATTCAGAACACTAGGCAAAAATCACAT 1038819
>seq530
Length=1149693
Score = 150 bits (166), Expect = 6e-34
Identities = 124/150 (83%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||||||||||| ||| |||| ||| ||| | | | | |||||||||||| ||||
Sbjct 378301 CTCCCACTTATTCTATACCGCTCATGTCTCTTCCCCATGCCAGACTAGAGTCAAACTCA- 378359
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||| ||||||||||| |||||||| |||||||||| || ||||||||||||||| || |
Sbjct 378360 CAGAATCTTCTTTCCCAGCTGATTCTGCCAAGCCCGGTCTCTTGGCTGTGGTTTCTCTGG 378419
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTT 386
||||| | |||| | |||||||||| |||
Sbjct 378420 ATAGTGGGTAGGTATTGTGGGAATCTTGTT 378449
>seq322
Length=1988940
Score = 132 bits (146), Expect = 2e-28
Identities = 136/174 (78%), Gaps = 8/174 (5%)
Strand=Plus/Plus
Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408
||| || ||| ||| |||| ||| |||||||| |||| ||||||||| || |||||
Sbjct 1629708 TTCACTGGATGCTAGGTAGGAACAATGGGAATCCTGTTA-TCCATTCATAGGCATCACTG 1629766
Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT-TACC 467
|||||||| |||| ||||||||||| | | |||| || ||||||| || ||||
Sbjct 1629767 TTTAGATGATGAGGTATTTGGCTACCCT--GCGAGTTATGGTTACTCT----GTGATACC 1629820
Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521
| |||| ||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 1629821 CTTGCTTCATTGAATTTCTTTACTTTGACATTGGGAGCACTGGGCAGAAGTCAC 1629874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635010496672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |