Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq6098 338 2e-90 seq1848 185 3e-44 seq6520 118 4e-24 seq2390 104 8e-20 >seq6098 Length=1150 Score = 338 bits (374), Expect = 2e-90 Identities = 414/564 (73%), Gaps = 12/564 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||| |||| | ||| ||| ||| |||| | | ||||| || Sbjct 622 TCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTCC 563 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| | ||||| | | |||||||||| ||| ||||| | ||||||||| Sbjct 562 GACCACGCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 504 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | |||||||||||||| || |||| | ||| ||| | ||| || |||||| || Sbjct 503 TCAAACTACCCACCAGACATGGTCCTCGTCCCGGATAACGGGACAGAGTTAGAACCTCAA 444 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || ||| |||||||||||| ||| ||||| | |||||||| || | ||| || Sbjct 443 TATTACCAGGGTGGTATTTCAAGGACGGCTCCATCGCAACTAGCGTCGCGACTTCAAAGC 384 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 |||||||||||||||||||| | | || |||| |||||| ||| ||||| | Sbjct 383 CTCCCACCTATCCTACACAAGTAAGATCAAAGTTCAATGTCAAGCTGCAGTAAAGGTTCA 324 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||||| |||| |||||| | | ||||||| || | | | ||||||| | Sbjct 323 CGGGGTCTTTCCGTCTAGCCGCGGGTACACCGCATCTTCACGGCGAATTCGATTTCACTG 264 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || || | |||||||| || ||| ||||||||||||||||||||||||||| Sbjct 263 AGTCTCTGCTGGAGACAGCGCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCC 204 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 203 GACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACTGGGGCTTC 144 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 || | || || | || ||| || | ||||||||||||||||| Sbjct 143 GATCAAGAGCTTCGCTTAC----------GCTAACCCCATCAATTAACCTTCCAGCACCG 94 Query 540 GGCAGGCGTCAGTCCGTATACCTC 563 ||||||| ||| || ||||| || Sbjct 93 GGCAGGCATCACACCCTATACGTC 70 >seq1848 Length=83282 Score = 185 bits (204), Expect = 3e-44 Identities = 342/491 (70%), Gaps = 13/491 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||| || |||||| | | | | |||| || | |||| || Sbjct 48858 TCGACTTGTCTGTCTCACAATCAAGCACACATATAGTATTACCCTTTTTGCGCGATTTCC 48917 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | ||| || | ||||||| ||||||||||||| |||| ||||| |||||||||||| Sbjct 48918 ATTCGCGCTAAGTGTACCTTTGCGCGCCTCCGTTACTTTTTAGGAGG-CAACCGCCCCAG 48976 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCA-AGGTTAGATATCCA 179 | ||||| |||||| |||||||| || |||||| ||| | | || || || | Sbjct 48977 TCAAACTGCCCACCTAACACTGTCCATAAACCAGATAGATGGCTATATGTAAG-TAAAAA 49035 Query 180 CT-ACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | | | | |||||||| || |||||||| |||||||| | | || || Sbjct 49036 TTGATTGAAATTGTGGTATTCCACTGTCGACTCCAACGACACTAGCGCATCATCTTCCTA 49095 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAA---TGCCAATACCAAGCTATAGTGAAG 295 ||||||||| ||| || | || || || | ||||| |||| || ||| ||| Sbjct 49096 GTCTCCCACATATTCT---CTAATATCAATAAACTTTCACAATATCAAGTTACAGTAAAG 49152 Query 296 GTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 | | |||||| | ||||| ||| || ||| |||| |||| || |||| Sbjct 49153 CTTCATAGGGTCTGTCCGTCCCATAGCGGCAAGAGAGTGTCTTCACTCTCACCAGGATTT 49212 Query 355 CACCGGGCCTGTGGTTGAGACAG-CAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413 ||||| |||| || ||||||| || | | | ||||| |||||| || || | ||| Sbjct 49213 CACCGAGCCTACAGTCGAGACAGTCAAGAGC-TGGTTACACCATTCAAGCGGGACAGAAT 49271 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 49272 TTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCAG 49331 Query 474 GGCTTCAATTA 484 ||||| | ||| Sbjct 49332 GGCTTAAGTTA 49342 >seq6520 Length=1017 Score = 118 bits (130), Expect = 4e-24 Identities = 130/172 (76%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||| |||||| | | | | |||| || | | |||| || Sbjct 182 TCGACTTGTCTGTCTCGCAATCAAGCACACATATAGTATTACCCTTTCTGCACGATTTCC 123 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | ||| || | ||||||| |||||||||||||||||| ||| |||||||||||||| Sbjct 122 ATACGTGCTAAGTGTACCTTTGCGCGCCTCCGTTACATTTTAGGA-GGCAACCGCCCCAG 64 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAG 172 | ||||| |||||| |||||||| || |||||| |||| | | ||||| Sbjct 63 TCAAACTGCCCACCTAACACTGTCCATAATCCAGATAATGGTCTTATGTTAG 12 >seq2390 Length=15461 Score = 104 bits (114), Expect = 8e-20 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||| | || ||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 10964 TCGTTGCTCCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGAC 10905 Query 446 GGTTATAGTTACCACCGCCGTTT-ACTGGGGCTT 478 |||||| ||| ||||||||| ||| | |||| Sbjct 10904 CGTTATAAATACAGCCGCCGTTTAACTAGAGCTT 10871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702202708864