Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02-
28] 11,589 sequences; 2,342,939,051 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq6098 338 2e-90
seq1848 185 3e-44
seq6520 118 4e-24
seq2390 104 8e-20
>seq6098
Length=1150
Score = 338 bits (374), Expect = 2e-90
Identities = 414/564 (73%), Gaps = 12/564 (2%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||||||| |||||||||| |||| | ||| ||| ||| |||| | | ||||| ||
Sbjct 622 TCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTCC 563
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|||| |||||| | ||||| | | |||||||||| ||| ||||| | |||||||||
Sbjct 562 GACCACGCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 504
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180
| |||||||||||||| || |||| | ||| ||| | ||| || |||||| ||
Sbjct 503 TCAAACTACCCACCAGACATGGTCCTCGTCCCGGATAACGGGACAGAGTTAGAACCTCAA 444
Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240
|| ||| |||||||||||| ||| ||||| | |||||||| || | ||| ||
Sbjct 443 TATTACCAGGGTGGTATTTCAAGGACGGCTCCATCGCAACTAGCGTCGCGACTTCAAAGC 384
Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299
|||||||||||||||||||| | | || |||| |||||| ||| ||||| |
Sbjct 383 CTCCCACCTATCCTACACAAGTAAGATCAAAGTTCAATGTCAAGCTGCAGTAAAGGTTCA 324
Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359
|||||||||| |||| |||||| | | ||||||| || | | | ||||||| |
Sbjct 323 CGGGGTCTTTCCGTCTAGCCGCGGGTACACCGCATCTTCACGGCGAATTCGATTTCACTG 264
Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419
| || || | |||||||| || ||| |||||||||||||||||||||||||||
Sbjct 263 AGTCTCTGCTGGAGACAGCGCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCC 204
Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 203 GACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACTGGGGCTTC 144
Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539
|| | || || | || ||| || | |||||||||||||||||
Sbjct 143 GATCAAGAGCTTCGCTTAC----------GCTAACCCCATCAATTAACCTTCCAGCACCG 94
Query 540 GGCAGGCGTCAGTCCGTATACCTC 563
||||||| ||| || ||||| ||
Sbjct 93 GGCAGGCATCACACCCTATACGTC 70
>seq1848
Length=83282
Score = 185 bits (204), Expect = 3e-44
Identities = 342/491 (70%), Gaps = 13/491 (3%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||||||| ||||| || |||||| | | | | |||| || | |||| ||
Sbjct 48858 TCGACTTGTCTGTCTCACAATCAAGCACACATATAGTATTACCCTTTTTGCGCGATTTCC 48917
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
| | ||| || | ||||||| ||||||||||||| |||| ||||| ||||||||||||
Sbjct 48918 ATTCGCGCTAAGTGTACCTTTGCGCGCCTCCGTTACTTTTTAGGAGG-CAACCGCCCCAG 48976
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCA-AGGTTAGATATCCA 179
| ||||| |||||| |||||||| || |||||| ||| | | || || || |
Sbjct 48977 TCAAACTGCCCACCTAACACTGTCCATAAACCAGATAGATGGCTATATGTAAG-TAAAAA 49035
Query 180 CT-ACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238
| | | | |||||||| || |||||||| |||||||| | | || ||
Sbjct 49036 TTGATTGAAATTGTGGTATTCCACTGTCGACTCCAACGACACTAGCGCATCATCTTCCTA 49095
Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAA---TGCCAATACCAAGCTATAGTGAAG 295
||||||||| ||| || | || || || | ||||| |||| || ||| |||
Sbjct 49096 GTCTCCCACATATTCT---CTAATATCAATAAACTTTCACAATATCAAGTTACAGTAAAG 49152
Query 296 GTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354
| | |||||| | ||||| ||| || ||| |||| |||| || ||||
Sbjct 49153 CTTCATAGGGTCTGTCCGTCCCATAGCGGCAAGAGAGTGTCTTCACTCTCACCAGGATTT 49212
Query 355 CACCGGGCCTGTGGTTGAGACAG-CAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413
||||| |||| || ||||||| || | | | ||||| |||||| || || | |||
Sbjct 49213 CACCGAGCCTACAGTCGAGACAGTCAAGAGC-TGGTTACACCATTCAAGCGGGACAGAAT 49271
Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473
||||| ||||||||||||||||||||||||| ||||||||||| |||||||| || |
Sbjct 49272 TTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCAG 49331
Query 474 GGCTTCAATTA 484
||||| | |||
Sbjct 49332 GGCTTAAGTTA 49342
>seq6520
Length=1017
Score = 118 bits (130), Expect = 4e-24
Identities = 130/172 (76%), Gaps = 1/172 (1%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||||||| |||||||| |||||| | | | | |||| || | | |||| ||
Sbjct 182 TCGACTTGTCTGTCTCGCAATCAAGCACACATATAGTATTACCCTTTCTGCACGATTTCC 123
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
| | ||| || | ||||||| |||||||||||||||||| ||| ||||||||||||||
Sbjct 122 ATACGTGCTAAGTGTACCTTTGCGCGCCTCCGTTACATTTTAGGA-GGCAACCGCCCCAG 64
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAG 172
| ||||| |||||| |||||||| || |||||| |||| | | |||||
Sbjct 63 TCAAACTGCCCACCTAACACTGTCCATAATCCAGATAATGGTCTTATGTTAG 12
>seq2390
Length=15461
Score = 104 bits (114), Expect = 8e-20
Identities = 80/94 (85%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
||||| | || ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 10964 TCGTTGCTCCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGAC 10905
Query 446 GGTTATAGTTACCACCGCCGTTT-ACTGGGGCTT 478
|||||| ||| ||||||||| ||| | ||||
Sbjct 10904 CGTTATAAATACAGCCGCCGTTTAACTAGAGCTT 10871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702202708864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |