Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq150 95.1 5e-14 seq846 86.0 3e-11 seq180 86.0 3e-11 >seq150 Length=4781790 Score = 95.1 bits (104), Expect = 5e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | ||||| |||||||||||||||||||| | || |||||| |||| || Sbjct 2549972 CTCCTTGAGGCGGGGCACACCCAGGGTCACGTTCTTGGCAGACACACCGGCATAGTGAAA 2550031 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | | ||||| ||| ||| ||||| || | | |||| | || ||| ||| || Sbjct 2550032 GGTGTTCAAGGTCATCTGGGTGGCAGGCTCTCCAAGGGACTGTGCGGCCAGGGCGCCCAC 2550091 Query 349204 CATCTCGCCGGG 349215 |||||| || || Sbjct 2550092 CATCTCCCCAGG 2550103 >seq846 Length=633994 Score = 86.0 bits (94), Expect = 3e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || ||||| |||| | ||||| |||||||| | |||| ||| || ||||| Sbjct 208114 GGCGTTGATGATCTCTTTGATCCGGGGCACACCCAGGGTGATGTTCATGGAGGCCACGCC 208173 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 ||||||||||| |||| ||||||| ||| ||| ||||| || |||| |||| Sbjct 208174 CGCAAAGTGGAAAGTCTTCAGGGTCATCTGGGTGCCTGGCTCACCAATGCTCTGG 208228 >seq180 Length=6490584 Score = 86.0 bits (94), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 349094 CTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGG 349153 || || ||||||||||| |||||| | | | |||||||||||||||||| | ||| Sbjct 1300512 CTCGGGATGCCCAGGGTGACGTTCATCTCGCCTCTGCCGGCAAAGTGGAAGGTGTTCAGG 1300453 Query 349154 GTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCG 349213 |||| ||||||| |||||| ||||||| ||| | || || | ||| || |||||| Sbjct 1300452 GTCATCTGCGTGGAGGGCTCCCCGATGCTCTGCGCAGCAAGCAGGCCCACGGCCTCGCCC 1300393 Query 349214 GG 349215 || Sbjct 1300392 GG 1300391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084422099441022