Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq4234 194 3e-47 seq4374 109 1e-21 seq2436 80.6 5e-13 seq4660 77.0 6e-12 >seq4234 Length=168850 Score = 194 bits (214), Expect = 3e-47 Identities = 236/319 (74%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 15 TGTTTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACG 74 || ||||||||||||||||| || || ||||| || || | | | |||||| | Sbjct 86726 TGCTTAGCGGATTTTCTCGGGAGTATGATTACCAGCTCTGTCACTTCGGACCGAAGTCCT 86785 Query 75 TTCCATACTGTCAATCTCGA-CTCTTTCCGTGGATTTGCCTGCGGAAATCAACGTCTACA 133 | |||| ||| || | ||| |||||||||||||| ||||| ||| | Sbjct 86786 CCGCGTACTCTCAGGCTTCAGCTCAAGGGGTGGATTTGCCTGCCCCTCTCAACACCTATA 86845 Query 134 CTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACC 193 | |||||||| |||||||||||||| |||||| |||||| ||| |||| || | || | Sbjct 86846 CCCTTTAACCTGCTATTCCGTCAGCAGGCGGCTGTGTCACGCCTCCGTCTCCGCATCGCG 86905 Query 194 CTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAAC 253 | | | |||||||||||| |||||||| ||||||||| |||||| || |||| | | Sbjct 86906 CGCTGCGGCAGTAACGGAATATTAACCGTTA-TGCCATCGGCCTCGCCATTAGGCTTATC 86964 Query 254 CTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGC 313 |||| ||||||||| |||| | |||||| || | | ||||||||| ||||| |||| Sbjct 86965 CTTAGGACCCGACTGACCCCGGGACGATTAACGTCGCCCGGGAAACCTTGGTCTTGCGGC 87024 Query 314 GAGGGGGTTTCCCACCCCC 332 ||||||| |||||||||| Sbjct 87025 GAGGGGGCATCCCACCCCC 87043 >seq4374 Length=59948 Score = 109 bits (120), Expect = 1e-21 Identities = 214/315 (68%), Gaps = 1/315 (0%) Strand=Plus/Plus Query 18 TTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACGTTC 77 ||||||| |||||||||| | || |||||| | || | | | ||| || | | Sbjct 526 TTAGCGGGTTTTCTCGGCGGCATGATTACCCTCGCTCTCCGCCGGGACCGGAGTCCCCGC 585 Query 78 CATACTGTCAATCTCGACTCTTTCCGTGGATTTGCCTGCGGAAATCAACGTCTACACTCT 137 |||||||| ||| ||| |||| | || ||||| | || || |||||| || Sbjct 586 GGTACTGTCAGGTTCGGCTCCGCGCGTGTACTTCACTGCGCACGTCTGCGCCTACACCCT 645 Query 138 TTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCTCA 197 | ||| | ||||||||| |||| | | |||| | ||||| || |||| | | || Sbjct 646 TCAACGCCCACTTCCGTCAGGGCGCGGAGGTTCCACTGCCGCGTCACCGCGTCGCACCCA 705 Query 198 AATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTA 257 || ||||||| ||||| | | ||||||| |||||||||||||| ||||| Sbjct 706 GCGCCGGTGCCGGAATATCAACCGGCTTT-CCATCGGCGTCGCCGTTCGGCTGGGCCTTA 764 Query 258 TGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGG 317 | |||||| |||| | ||||| || | | ||||||||| ||||| ||||| || Sbjct 765 GGGACCGACTAACCCCGGGACGATTGACGTCGCCCGGGAAACCTTGGTCTTACGGCGGGG 824 Query 318 GGGTTTCCCACCCCC 332 ||| ||| | ||||| Sbjct 825 GGGATTCGCGCCCCC 839 >seq2436 Length=67316 Score = 80.6 bits (88), Expect = 5e-13 Identities = 133/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 126 CGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCC 185 || |||| | ||| ||| |||||||||||||| ||||| ||||||||| || | | Sbjct 1515 CGCCTACGCCCTTCAACGTGCTATTCCGTCAGCACGCGGCCGTGTCACTCC-CCGGTCTC 1457 Query 186 ACG-TCACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTT 244 ||| || || ||| | |||||| |||||| || | |||||| || || || Sbjct 1456 ACGCTCTCCTGTAAAGCAGGCGGCGGAATCTTAACCGCCTC-GTCATCGGGATCCCCCTT 1398 Query 245 CGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAG 304 ||| | | ||||| |||| |||||||| | || ||| || || | |||||||||| | Sbjct 1397 CGGGTTACCCTTAGTCCCCGGCTTACCCTCAGGCGTTTAACGTTGCTGAGGAAACCTTGG 1338 Query 305 TCTTTCGG 312 |||||| Sbjct 1337 GTTTTCGG 1330 >seq4660 Length=54038 Score = 77.0 bits (84), Expect = 6e-12 Identities = 124/177 (70%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||| |||| |||||||||||| |||||| ||||||| || ||| | || || Sbjct 1216 CTTCAACCACCTATTCCGTCAGGTGGCGGCAGTGTCACTTCTCGGTCTCTGGCTCTCCTG 1275 Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCT 255 | |||| ||||||| |||||| || | |||||| ||||| |||||| ||| Sbjct 1276 CTGCGCGAGTATCGGAATATTAACCGATT-GGTCATCGGGTTCGCCTCTCGGCTACCCCT 1334 Query 256 TATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGG 312 || ||||||| ||||| | ||| ||| || | | ||||||||| | ||| ||| Sbjct 1335 TAGTCCCCGACTAACCCTCAGCCGTTTAACGTCGCTGAGGAAACCTGGGGCTTACGG 1391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959951049600