Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01000056.1
Length=332
Score E
Sequences producing significant alignments: (Bits) Value
seq4234 194 3e-47
seq4374 109 1e-21
seq2436 80.6 5e-13
seq4660 77.0 6e-12
>seq4234
Length=168850
Score = 194 bits (214), Expect = 3e-47
Identities = 236/319 (74%), Gaps = 2/319 (1%)
Strand=Plus/Plus
Query 15 TGTTTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACG 74
|| ||||||||||||||||| || || ||||| || || | | | |||||| |
Sbjct 86726 TGCTTAGCGGATTTTCTCGGGAGTATGATTACCAGCTCTGTCACTTCGGACCGAAGTCCT 86785
Query 75 TTCCATACTGTCAATCTCGA-CTCTTTCCGTGGATTTGCCTGCGGAAATCAACGTCTACA 133
| |||| ||| || | ||| |||||||||||||| ||||| ||| |
Sbjct 86786 CCGCGTACTCTCAGGCTTCAGCTCAAGGGGTGGATTTGCCTGCCCCTCTCAACACCTATA 86845
Query 134 CTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACC 193
| |||||||| |||||||||||||| |||||| |||||| ||| |||| || | || |
Sbjct 86846 CCCTTTAACCTGCTATTCCGTCAGCAGGCGGCTGTGTCACGCCTCCGTCTCCGCATCGCG 86905
Query 194 CTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAAC 253
| | | |||||||||||| |||||||| ||||||||| |||||| || |||| | |
Sbjct 86906 CGCTGCGGCAGTAACGGAATATTAACCGTTA-TGCCATCGGCCTCGCCATTAGGCTTATC 86964
Query 254 CTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGC 313
|||| ||||||||| |||| | |||||| || | | ||||||||| ||||| ||||
Sbjct 86965 CTTAGGACCCGACTGACCCCGGGACGATTAACGTCGCCCGGGAAACCTTGGTCTTGCGGC 87024
Query 314 GAGGGGGTTTCCCACCCCC 332
||||||| ||||||||||
Sbjct 87025 GAGGGGGCATCCCACCCCC 87043
>seq4374
Length=59948
Score = 109 bits (120), Expect = 1e-21
Identities = 214/315 (68%), Gaps = 1/315 (0%)
Strand=Plus/Plus
Query 18 TTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACGTTC 77
||||||| |||||||||| | || |||||| | || | | | ||| || | |
Sbjct 526 TTAGCGGGTTTTCTCGGCGGCATGATTACCCTCGCTCTCCGCCGGGACCGGAGTCCCCGC 585
Query 78 CATACTGTCAATCTCGACTCTTTCCGTGGATTTGCCTGCGGAAATCAACGTCTACACTCT 137
|||||||| ||| ||| |||| | || ||||| | || || |||||| ||
Sbjct 586 GGTACTGTCAGGTTCGGCTCCGCGCGTGTACTTCACTGCGCACGTCTGCGCCTACACCCT 645
Query 138 TTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCTCA 197
| ||| | ||||||||| |||| | | |||| | ||||| || |||| | | ||
Sbjct 646 TCAACGCCCACTTCCGTCAGGGCGCGGAGGTTCCACTGCCGCGTCACCGCGTCGCACCCA 705
Query 198 AATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTA 257
|| ||||||| ||||| | | ||||||| |||||||||||||| |||||
Sbjct 706 GCGCCGGTGCCGGAATATCAACCGGCTTT-CCATCGGCGTCGCCGTTCGGCTGGGCCTTA 764
Query 258 TGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGG 317
| |||||| |||| | ||||| || | | ||||||||| ||||| ||||| ||
Sbjct 765 GGGACCGACTAACCCCGGGACGATTGACGTCGCCCGGGAAACCTTGGTCTTACGGCGGGG 824
Query 318 GGGTTTCCCACCCCC 332
||| ||| | |||||
Sbjct 825 GGGATTCGCGCCCCC 839
>seq2436
Length=67316
Score = 80.6 bits (88), Expect = 5e-13
Identities = 133/188 (71%), Gaps = 3/188 (2%)
Strand=Plus/Minus
Query 126 CGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCC 185
|| |||| | ||| ||| |||||||||||||| ||||| ||||||||| || | |
Sbjct 1515 CGCCTACGCCCTTCAACGTGCTATTCCGTCAGCACGCGGCCGTGTCACTCC-CCGGTCTC 1457
Query 186 ACG-TCACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTT 244
||| || || ||| | |||||| |||||| || | |||||| || || ||
Sbjct 1456 ACGCTCTCCTGTAAAGCAGGCGGCGGAATCTTAACCGCCTC-GTCATCGGGATCCCCCTT 1398
Query 245 CGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAG 304
||| | | ||||| |||| |||||||| | || ||| || || | |||||||||| |
Sbjct 1397 CGGGTTACCCTTAGTCCCCGGCTTACCCTCAGGCGTTTAACGTTGCTGAGGAAACCTTGG 1338
Query 305 TCTTTCGG 312
||||||
Sbjct 1337 GTTTTCGG 1330
>seq4660
Length=54038
Score = 77.0 bits (84), Expect = 6e-12
Identities = 124/177 (70%), Gaps = 1/177 (1%)
Strand=Plus/Plus
Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195
||| |||| |||||||||||| |||||| ||||||| || ||| | || ||
Sbjct 1216 CTTCAACCACCTATTCCGTCAGGTGGCGGCAGTGTCACTTCTCGGTCTCTGGCTCTCCTG 1275
Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCT 255
| |||| ||||||| |||||| || | |||||| ||||| |||||| |||
Sbjct 1276 CTGCGCGAGTATCGGAATATTAACCGATT-GGTCATCGGGTTCGCCTCTCGGCTACCCCT 1334
Query 256 TATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGG 312
|| ||||||| ||||| | ||| ||| || | | ||||||||| | ||| |||
Sbjct 1335 TAGTCCCCGACTAACCCTCAGCCGTTTAACGTCGCTGAGGAAACCTGGGGCTTACGG 1391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 959951049600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |