Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq4374 311 2e-82
seq2436 284 2e-74
seq4660 262 8e-68
seq4234 241 3e-61
>seq4374
Length=59948
Score = 311 bits (344), Expect = 2e-82
Identities = 271/332 (82%), Gaps = 6/332 (2%)
Strand=Plus/Minus
Query 9 GCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT 68
|||| || |||||| || |||||| || |||||||||||| |||||||| | | |
Sbjct 1630 GCAGAGGAGTGAAAGAGTACCTGAAACCATGCGCCTACAAGCTGTCGGAGCTGTCCGTTG 1571
Query 69 CGG---TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125
|| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 1570 TGGCAGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTT-GCCGTCACCGGCGAGGT 1512
Query 126 TAAGGGCT-TCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGG 184
|||| | | | || | || ||||||||||||||||||| | || || ||| |||| |
Sbjct 1511 TAAGCGGTATGAGCCGCGC-AGCCGAAGTGAAAGCGAGCATGAAGAGTGCGTTGAGTCTG 1453
Query 185 TGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCG 244
||||| |||||||||||| ||||||||||| | |||| ||||||| ||||||||||
Sbjct 1452 TGGCGGCAGACGCGAAACCGGGTGATCTACCCGTGCCCAGGCTGAAGTCCCGGTAACGCG 1393
Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304
|||||||| |||||||| ||| |||||||||| || ||||||| ||||||||| |||
Sbjct 1392 GGATGGAGGGCCGAACCGATAAGCGTTGAAAAGCTTCCGGATGAGGTGCGGGTAGGAGTG 1333
Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336
||||||||||||||| ||| |||||||||||
Sbjct 1332 AAAGGCCAATCAAACCCGGAGATAGCTCGTAC 1301
>seq2436
Length=67316
Score = 284 bits (314), Expect = 2e-74
Identities = 268/338 (79%), Gaps = 9/338 (3%)
Strand=Plus/Plus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
|||||||||||| |||||| ||| |||||| ||| || |||||||||||||||| |
Sbjct 517 CCCGAGCAGGGGAGTGAAACAGAACCTGAAACCGTTCGTTTACAAGCGGTCGGAGCGTCG 576
Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123
| | || ||||||||||||||||||||||||||||||||||| | |||||
Sbjct 577 TAAGGCGC-GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTGTATCTTTGTGGCGAG 635
Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183
|||||| ||||||| ||| ||||| || || |||||| || ||||||||| ||| |
Sbjct 636 GTTAAGCACTTCAGGTGCGTAAGCCGTAGCGAGAGCGAGTCTGAACAGGGCGCCGA--TA 693
Query 184 GT-----GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238
|| || | ||||||||||||| |||||||||||| || |||| |||||| |||||
Sbjct 694 GTCACAAGGAAC-AGACGCGAAACCTAGTGATCTACCCATGACCAGGGTGAAGTGGCGGT 752
Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298
||| || ||||||| ||||||| || |||||||||| | |||||| | | |||||
Sbjct 753 AACACGCCATGGAGGCCCGAACCAGTTTCCGTTGAAAAGGGCTTGGATGAGTTGTGGGTA 812
Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336
|| ||||||||||||||||||||||| |||||||||||
Sbjct 813 GGAGTGAAAGGCCAATCAAACTGGGAGATAGCTCGTAC 850
>seq4660
Length=54038
Score = 262 bits (290), Expect = 8e-68
Identities = 264/338 (78%), Gaps = 10/338 (3%)
Strand=Plus/Minus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
|||| ||||||| |||||| ||| |||||| ||| || ||||||||||||||||
Sbjct 2208 CCCGGGCAGGGGAGTGAAACAGAACCTGAAACCGTTCGTTTACAAGCGGTCGGAGCACC- 2150
Query 64 TGATTCGGT---GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120
||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2149 ---TTCGGGTGCGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTGCATTGCACTGGC 2093
Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GA 179
||||||||| ||||||| ||| ||||| || || |||||| || ||||||||| ||
Sbjct 2092 GAGGTTAAGTCCTTCAGGGACGTAAGCCGCAGCGAGAGCGAGTCTGAACAGGGCGCTTGA 2033
Query 180 GTTGGTG-GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238
|| ||| | || ||||||||||||| |||||||||||| | |||| ||||| | ||
Sbjct 2032 GTCAGTGCGAGC-AGACGCGAAACCTAGTGATCTACCCATGGCCAGGGTGAAGGTACCGT 1974
Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298
||| || |||||| ||||||| || |||||||||| | |||||| | |||||
Sbjct 1973 AACAGGTACTGGAGGCCCGAACCAGTTTCCGTTGAAAAGGGCTTGGATGAGCTGTGGGTA 1914
Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336
|| ||||||||||||||||||||||| |||||||||||
Sbjct 1913 GGAGTGAAAGGCCAATCAAACTGGGAGATAGCTCGTAC 1876
>seq4234
Length=168850
Score = 241 bits (266), Expect = 3e-61
Identities = 260/339 (77%), Gaps = 9/339 (3%)
Strand=Plus/Minus
Query 4 CCCG-AGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA 62
|||| || | ||| |||||| || |||||| || ||||||||||||||||||||
Sbjct 87837 CCCGTAGTACGGGAGTGAAAGAGTACCTGAAACCATACGCCTACAAGCGGTCGGAGCGCC 87778
Query 63 GTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGA 122
| || |||||||||||||||||||||||||| |||||||||| | | || | || |
Sbjct 87777 TTTATGGTGTGACGGCGTGCCTTTTGCATAATGAACCTACGAGTT-GCCATCTCTGGCAA 87719
Query 123 GGTTAAGGGCTTCAGGC---CCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG- 178
|||||||| || | ||| ||||| || ||||||||| || || |||||| |
Sbjct 87718 GGTTAAGGAAGATAGACTTCCCG--AGCCGCAGCGAAAGCGAGTCTGAAAGGGGCGAAGT 87661
Query 179 -AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237
||| | || | |||||||||||| ||||||||| || | |||| ||||||| |||
Sbjct 87660 GAGTCAGAGGGGGCAGACGCGAAACCGAGTGATCTACACATGTCCAGGATGAAGTCCCGG 87601
Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297
|||| || |||||||| ||| || | ||| |||||||||| || | ||||| | | ||
Sbjct 87600 TAACACGGGATGGAGGTCCGCACGGATAAGCGTTGAAAAGCTTCCCGATGAGGTGTGTGT 87541
Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336
||| ||||||||||||||||||| ||| |||||||||||
Sbjct 87540 AGGAGTGAAAGGCCAATCAAACTCGGAGATAGCTCGTAC 87502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972750396928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |