Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq4374 311 2e-82 seq2436 284 2e-74 seq4660 262 8e-68 seq4234 241 3e-61 >seq4374 Length=59948 Score = 311 bits (344), Expect = 2e-82 Identities = 271/332 (82%), Gaps = 6/332 (2%) Strand=Plus/Minus Query 9 GCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATT 68 |||| || |||||| || |||||| || |||||||||||| |||||||| | | | Sbjct 1630 GCAGAGGAGTGAAAGAGTACCTGAAACCATGCGCCTACAAGCTGTCGGAGCTGTCCGTTG 1571 Query 69 CGG---TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125 || |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| Sbjct 1570 TGGCAGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTT-GCCGTCACCGGCGAGGT 1512 Query 126 TAAGGGCT-TCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGG 184 |||| | | | || | || ||||||||||||||||||| | || || ||| |||| | Sbjct 1511 TAAGCGGTATGAGCCGCGC-AGCCGAAGTGAAAGCGAGCATGAAGAGTGCGTTGAGTCTG 1453 Query 185 TGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCG 244 ||||| |||||||||||| ||||||||||| | |||| ||||||| |||||||||| Sbjct 1452 TGGCGGCAGACGCGAAACCGGGTGATCTACCCGTGCCCAGGCTGAAGTCCCGGTAACGCG 1393 Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304 |||||||| |||||||| ||| |||||||||| || ||||||| ||||||||| ||| Sbjct 1392 GGATGGAGGGCCGAACCGATAAGCGTTGAAAAGCTTCCGGATGAGGTGCGGGTAGGAGTG 1333 Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||||||||||| ||| ||||||||||| Sbjct 1332 AAAGGCCAATCAAACCCGGAGATAGCTCGTAC 1301 >seq2436 Length=67316 Score = 284 bits (314), Expect = 2e-74 Identities = 268/338 (79%), Gaps = 9/338 (3%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 |||||||||||| |||||| ||| |||||| ||| || |||||||||||||||| | Sbjct 517 CCCGAGCAGGGGAGTGAAACAGAACCTGAAACCGTTCGTTTACAAGCGGTCGGAGCGTCG 576 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | | || ||||||||||||||||||||||||||||||||||| | ||||| Sbjct 577 TAAGGCGC-GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTGTATCTTTGTGGCGAG 635 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||| ||||||| ||| ||||| || || |||||| || ||||||||| ||| | Sbjct 636 GTTAAGCACTTCAGGTGCGTAAGCCGTAGCGAGAGCGAGTCTGAACAGGGCGCCGA--TA 693 Query 184 GT-----GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 || || | ||||||||||||| |||||||||||| || |||| |||||| ||||| Sbjct 694 GTCACAAGGAAC-AGACGCGAAACCTAGTGATCTACCCATGACCAGGGTGAAGTGGCGGT 752 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| || ||||||| ||||||| || |||||||||| | |||||| | | ||||| Sbjct 753 AACACGCCATGGAGGCCCGAACCAGTTTCCGTTGAAAAGGGCTTGGATGAGTTGTGGGTA 812 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 || ||||||||||||||||||||||| ||||||||||| Sbjct 813 GGAGTGAAAGGCCAATCAAACTGGGAGATAGCTCGTAC 850 >seq4660 Length=54038 Score = 262 bits (290), Expect = 8e-68 Identities = 264/338 (78%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 |||| ||||||| |||||| ||| |||||| ||| || |||||||||||||||| Sbjct 2208 CCCGGGCAGGGGAGTGAAACAGAACCTGAAACCGTTCGTTTACAAGCGGTCGGAGCACC- 2150 Query 64 TGATTCGGT---GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 ||||| ||||||||||||||||||||||||||||||||||| ||| || Sbjct 2149 ---TTCGGGTGCGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTGCATTGCACTGGC 2093 Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GA 179 ||||||||| ||||||| ||| ||||| || || |||||| || ||||||||| || Sbjct 2092 GAGGTTAAGTCCTTCAGGGACGTAAGCCGCAGCGAGAGCGAGTCTGAACAGGGCGCTTGA 2033 Query 180 GTTGGTG-GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 || ||| | || ||||||||||||| |||||||||||| | |||| ||||| | || Sbjct 2032 GTCAGTGCGAGC-AGACGCGAAACCTAGTGATCTACCCATGGCCAGGGTGAAGGTACCGT 1974 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| || |||||| ||||||| || |||||||||| | |||||| | ||||| Sbjct 1973 AACAGGTACTGGAGGCCCGAACCAGTTTCCGTTGAAAAGGGCTTGGATGAGCTGTGGGTA 1914 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 || ||||||||||||||||||||||| ||||||||||| Sbjct 1913 GGAGTGAAAGGCCAATCAAACTGGGAGATAGCTCGTAC 1876 >seq4234 Length=168850 Score = 241 bits (266), Expect = 3e-61 Identities = 260/339 (77%), Gaps = 9/339 (3%) Strand=Plus/Minus Query 4 CCCG-AGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGA 62 |||| || | ||| |||||| || |||||| || |||||||||||||||||||| Sbjct 87837 CCCGTAGTACGGGAGTGAAAGAGTACCTGAAACCATACGCCTACAAGCGGTCGGAGCGCC 87778 Query 63 GTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGA 122 | || |||||||||||||||||||||||||| |||||||||| | | || | || | Sbjct 87777 TTTATGGTGTGACGGCGTGCCTTTTGCATAATGAACCTACGAGTT-GCCATCTCTGGCAA 87719 Query 123 GGTTAAGGGCTTCAGGC---CCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG- 178 |||||||| || | ||| ||||| || ||||||||| || || |||||| | Sbjct 87718 GGTTAAGGAAGATAGACTTCCCG--AGCCGCAGCGAAAGCGAGTCTGAAAGGGGCGAAGT 87661 Query 179 -AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 ||| | || | |||||||||||| ||||||||| || | |||| ||||||| ||| Sbjct 87660 GAGTCAGAGGGGGCAGACGCGAAACCGAGTGATCTACACATGTCCAGGATGAAGTCCCGG 87601 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 |||| || |||||||| ||| || | ||| |||||||||| || | ||||| | | || Sbjct 87600 TAACACGGGATGGAGGTCCGCACGGATAAGCGTTGAAAAGCTTCCCGATGAGGTGTGTGT 87541 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||| ||||||||||||||||||| ||| ||||||||||| Sbjct 87540 AGGAGTGAAAGGCCAATCAAACTCGGAGATAGCTCGTAC 87502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972750396928