Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2436 134 1e-29 seq4234 125 7e-27 seq4711 118 1e-24 seq4660 118 1e-24 seq4374 102 8e-20 >seq2436 Length=67316 Score = 134 bits (148), Expect = 1e-29 Identities = 139/179 (78%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTC-GGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTAC 64 |||||||||||||||||| || |||||||| ||| |||||| ||||||||||||||| | Sbjct 23 ACGGTGGATGCCTAGGCTATCCGGAGGCGATGAAAGACGTGGTAAGCTGCGAAAAGCCGC 82 Query 65 GGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGG 124 ||||||| ||| | | || |||||||| ||| || |||||||||||||| | |||| Sbjct 83 GGGGATTTGCAAACAGGAGTTGATCCGCGGATGTCTGAATGGGGCAACCCACTGGATTGA 142 Query 125 AGAT---ATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 |||| || ||| | | | ||||||| ||||||||||||||||| |||| Sbjct 143 AGATCCAGTACCAT--CTGTGAAGATGGGGCGAACCCGGGGAACTGAAACATCTTAGTA 199 >seq4234 Length=168850 Score = 125 bits (138), Expect = 7e-27 Identities = 141/179 (79%), Gaps = 11/179 (6%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| Sbjct 88328 GGCGGATGCCTAGGCTCTCACAGGCGAAGAAGGACGTGATAAGCTGCGATAAGCTGCGGG 88269 Query 68 GATTGGCACAT-ACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA-TTGGA 125 | ||| || || | ||||||| ||| |||||||||| |||||| | || ||| | Sbjct 88268 TAGGTGCAAATGACCTA-TGATCCGCGGATTTCCGAATGGGACAACCC-ACCTACTTGAA 88211 Query 126 GA-TA--TAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || || ||| ||| | || | ||||||||| ||||||||||||||||| |||| Sbjct 88210 GAGTAGGTATCCATTA---TATGATGGAGGCGAACGCGGGGAACTGAAACATCTTAGTA 88155 >seq4711 Length=7849 Score = 118 bits (130), Expect = 1e-24 Identities = 137/179 (77%), Gaps = 8/179 (4%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| |||||||| |||| || | |||| |||||||||| |||||||||||||||| || Sbjct 206 ACGGAGGATGCCTTGGCTTCCGAAAGCGAGGAAGGACGTGGTAAGCTGCGAAAAGCTCCG 147 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA-TTGG 124 |||| ||| | | | |||||||| |||||||||||||||| ||||| | | | ||| Sbjct 146 GGGAACCGCAAACAGGTTTTGATCCGGAGATATCCGAATGGGGTAACCC-ACACAGTTGA 88 Query 125 AG---ATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || | |||| | ||||| | ||||||| |||||||||||||||| |||| Sbjct 87 AGGCTGTGTATC-GCCTGAAAGGCG--AAGCGAACGCAGGGAACTGAAACATCTTAGTA 32 >seq4660 Length=54038 Score = 118 bits (130), Expect = 1e-24 Identities = 137/179 (77%), Gaps = 8/179 (4%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| |||||||| |||| || | |||| |||||||||| |||||||||||||||| || Sbjct 2700 ACGGAGGATGCCTTGGCTTCCGAAAGCGAGGAAGGACGTGGTAAGCTGCGAAAAGCTCCG 2641 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA-TTGG 124 |||| ||| | | | |||||||| |||||||||||||||| ||||| | | | ||| Sbjct 2640 GGGAACCGCAAACAGGTTTTGATCCGGAGATATCCGAATGGGGTAACCC-ACACAGTTGA 2582 Query 125 AG---ATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || | |||| | ||||| | ||||||| |||||||||||||||| |||| Sbjct 2581 AGGCTGTGTATC-GCCTGAAAGGCG--AAGCGAACGCAGGGAACTGAAACATCTTAGTA 2526 >seq4374 Length=59948 Score = 102 bits (112), Expect = 8e-20 Identities = 89/109 (82%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || ||||||||||||||| | |||||| |||||||| | |||||||||||||| |||| Sbjct 2134 GGCGGATGCCTAGGCTCTGGAAGGCGATGAAGGACGCGGCAAGCTGCGAAAAGCCGCGGG 2075 Query 68 GATTGGCACATACG--AATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || ||| ||| || |||||||| ||| ||||||||||||||||| Sbjct 2074 GA--GGCGCATGCGGCCTTTGATCCGCGGATGTCCGAATGGGGCAACCC 2028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476776447719