Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01000370.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq2436 134 1e-29
seq4234 125 7e-27
seq4711 118 1e-24
seq4660 118 1e-24
seq4374 102 8e-20
>seq2436
Length=67316
Score = 134 bits (148), Expect = 1e-29
Identities = 139/179 (78%), Gaps = 6/179 (3%)
Strand=Plus/Plus
Query 6 ACGGTGGATGCCTAGGCTCTC-GGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTAC 64
|||||||||||||||||| || |||||||| ||| |||||| ||||||||||||||| |
Sbjct 23 ACGGTGGATGCCTAGGCTATCCGGAGGCGATGAAAGACGTGGTAAGCTGCGAAAAGCCGC 82
Query 65 GGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGG 124
||||||| ||| | | || |||||||| ||| || |||||||||||||| | ||||
Sbjct 83 GGGGATTTGCAAACAGGAGTTGATCCGCGGATGTCTGAATGGGGCAACCCACTGGATTGA 142
Query 125 AGAT---ATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
|||| || ||| | | | ||||||| ||||||||||||||||| ||||
Sbjct 143 AGATCCAGTACCAT--CTGTGAAGATGGGGCGAACCCGGGGAACTGAAACATCTTAGTA 199
>seq4234
Length=168850
Score = 125 bits (138), Expect = 7e-27
Identities = 141/179 (79%), Gaps = 11/179 (6%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
|| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 88328 GGCGGATGCCTAGGCTCTCACAGGCGAAGAAGGACGTGATAAGCTGCGATAAGCTGCGGG 88269
Query 68 GATTGGCACAT-ACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA-TTGGA 125
| ||| || || | ||||||| ||| |||||||||| |||||| | || ||| |
Sbjct 88268 TAGGTGCAAATGACCTA-TGATCCGCGGATTTCCGAATGGGACAACCC-ACCTACTTGAA 88211
Query 126 GA-TA--TAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
|| || ||| ||| | || | ||||||||| ||||||||||||||||| ||||
Sbjct 88210 GAGTAGGTATCCATTA---TATGATGGAGGCGAACGCGGGGAACTGAAACATCTTAGTA 88155
>seq4711
Length=7849
Score = 118 bits (130), Expect = 1e-24
Identities = 137/179 (77%), Gaps = 8/179 (4%)
Strand=Plus/Minus
Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65
|||| |||||||| |||| || | |||| |||||||||| |||||||||||||||| ||
Sbjct 206 ACGGAGGATGCCTTGGCTTCCGAAAGCGAGGAAGGACGTGGTAAGCTGCGAAAAGCTCCG 147
Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA-TTGG 124
|||| ||| | | | |||||||| |||||||||||||||| ||||| | | | |||
Sbjct 146 GGGAACCGCAAACAGGTTTTGATCCGGAGATATCCGAATGGGGTAACCC-ACACAGTTGA 88
Query 125 AG---ATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
|| | |||| | ||||| | ||||||| |||||||||||||||| ||||
Sbjct 87 AGGCTGTGTATC-GCCTGAAAGGCG--AAGCGAACGCAGGGAACTGAAACATCTTAGTA 32
>seq4660
Length=54038
Score = 118 bits (130), Expect = 1e-24
Identities = 137/179 (77%), Gaps = 8/179 (4%)
Strand=Plus/Minus
Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65
|||| |||||||| |||| || | |||| |||||||||| |||||||||||||||| ||
Sbjct 2700 ACGGAGGATGCCTTGGCTTCCGAAAGCGAGGAAGGACGTGGTAAGCTGCGAAAAGCTCCG 2641
Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA-TTGG 124
|||| ||| | | | |||||||| |||||||||||||||| ||||| | | | |||
Sbjct 2640 GGGAACCGCAAACAGGTTTTGATCCGGAGATATCCGAATGGGGTAACCC-ACACAGTTGA 2582
Query 125 AG---ATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
|| | |||| | ||||| | ||||||| |||||||||||||||| ||||
Sbjct 2581 AGGCTGTGTATC-GCCTGAAAGGCG--AAGCGAACGCAGGGAACTGAAACATCTTAGTA 2526
>seq4374
Length=59948
Score = 102 bits (112), Expect = 8e-20
Identities = 89/109 (82%), Gaps = 4/109 (4%)
Strand=Plus/Minus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
|| ||||||||||||||| | |||||| |||||||| | |||||||||||||| ||||
Sbjct 2134 GGCGGATGCCTAGGCTCTGGAAGGCGATGAAGGACGCGGCAAGCTGCGAAAAGCCGCGGG 2075
Query 68 GATTGGCACATACG--AATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|| ||| ||| || |||||||| ||| |||||||||||||||||
Sbjct 2074 GA--GGCGCATGCGGCCTTTGATCCGCGGATGTCCGAATGGGGCAACCC 2028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476776447719
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |