Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq4660 246 8e-63 seq4910 237 4e-60 seq4374 226 7e-57 >seq4660 Length=54038 Score = 246 bits (272), Expect = 8e-63 Identities = 304/410 (74%), Gaps = 8/410 (2%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| | | ||||||||| ||||||||| |||||||||||||||||||||||| ||| ||| Sbjct 4032 TACATCACGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGC 3973 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT-TGTGTAAGACAGGTG 121 |||||||| |||| ||| |||| ||||| ||||| |||| || ||| ||| ||| | Sbjct 3972 AAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCTGTCTGT-CAAGTCAGAGG 3914 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 |||||| || | || |||| |||| ||| |||| |||| | || || | | | Sbjct 3913 TGAAATACCTGAGCCTAACTCAGGAACTGCCTTTGATACTGGCAGGCTGGAATACGGATG 3854 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 | ||| ||||| ||||||| ||||||||| ||||||| ||||||| || Sbjct 3853 CCGTGGGAGGAATGAGTAGTGTAGCGGTGAAATGCATAGATATTACTCAGAACACCGATT 3794 Query 242 GCGAAGGCAGCCCCCTGGGAT--AACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299 ||||||||| | | | | || || ||||||| | ||||||||||||||||| |||| Sbjct 3793 GCGAAGGCATCTCAC--GAATCCGTCATTGACGCTGAGGCACGAAAGCGTGGGGATCAAA 3736 Query 300 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTT 359 |||||||||||||||||||||||||||| |||||||| ||||| || || || | Sbjct 3735 CAGGATTAGATACCCTGGTAGTCCACGCAGTAAACGATGATAACTAACCGTCGGCGA--T 3678 Query 360 ACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || | ||| | ||| || ||| ||||| || |||||||| ||| Sbjct 3677 ACACAGTCGGTGGCCAAGCGAAAGCGATAAGTTATCCACCTGGGGAGTAC 3628 >seq4910 Length=11294 Score = 237 bits (262), Expect = 4e-60 Identities = 250/328 (76%), Gaps = 1/328 (0%) Strand=Plus/Minus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| ||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||| Sbjct 1732 AGAACAAGCACCGGCTAATTACGTGCCAGCAGCCGCGGTAACACGTAAGGTGCGAGCGTT 1673 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||||| ||||||||||| | | ||||||| ||||| | || |||||||| Sbjct 1672 GTTCGGAATTATTGGGCGTAAAGGGCATGTAGGCGGTCCGGTAAGTCGGGCGTGAAATCG 1613 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 | |||| |||| | || | ||||| | || |||| | || || || Sbjct 1612 CGGGGCCCAACCCCGCGCG-GCGCCCGATACTGCTGGTCTTGAGTCAGCGAGGCGGAGGC 1554 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||||| |||||| ||||||| |||||||| ||| ||||||| |||||||||| Sbjct 1553 GGAATTCCTGGTGTAGGGGTGAAATCTGTAGATATCAGGAAGAACACCGGTGGCGAAGGC 1494 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 |||| || | | ||||||||| | | |||| | | |||||||||||||||||||| Sbjct 1493 AGCCTCCGAGCGCATGACTGACGCTGAGGTGCGAAGGTGCGGGGAGCAAACAGGATTAGA 1434 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||| | | |||||||| Sbjct 1433 TACCCTGGTAGTCCGCACAGTAAACGAT 1406 >seq4374 Length=59948 Score = 226 bits (250), Expect = 7e-57 Identities = 247/327 (76%), Gaps = 1/327 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||| ||||||||| | |||||||||||||||||||||||| | ||| | |||||| Sbjct 3736 GAATAAGGACCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGAAGGTCCGGGCGTTA 3677 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| ||| |||| ||||| | |||||||||| ||| ||| ||||||| | Sbjct 3676 TCCGGATTTATTGGGTTTAAAGGGAGCGCAGGCGGGAAGTCAAGTCAGCCGTGAAATGTC 3617 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 | |||| |||| || || || ||| |||| || | ||| ||||| || | Sbjct 3616 CCGGCTCAACCGGGTCAT-GCGGTTGAAACTGTCTTTCTTGGGTGCACAAGAGGCAGGCG 3558 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||| || ||||||| ||||||||| ||||||| || |||| || || ||||||||| Sbjct 3557 GAACTCGTGGTGTAGCGGTGAAATGCATAGATATCACGATGAACCCCGATTGCGAAGGCA 3498 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 ||| | ||| | || ||||||||||| |||| ||| ||| | ||||||||||||||| Sbjct 3497 GCCTGCCGGGGTGTTACCGACGCTCATGCTCGAAGGCGCGGGTATCAAACAGGATTAGAT 3438 Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||| ||| |||||||| Sbjct 3437 ACCCTGGTAGTCCGCGCGGTAAACGAT 3411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289534243296