Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq4374 156 6e-36
seq4234 147 3e-33
seq4660 143 4e-32
seq2436 123 3e-26
>seq4374
Length=59948
Score = 156 bits (172), Expect = 6e-36
Identities = 183/248 (74%), Gaps = 21/248 (8%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||||||||||| ||||| | |||||| | | ||| | ||| ||||
Sbjct 277 CTTAACCTTCCGGCACCGGGCAGGTGTCAGGCTGTATACGTGGCCTTCATG-CTTTGCAC 335
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| ||||||||||| ||||||||| || | | ||||||||| | || |
Sbjct 336 AGCCCTGTGTTTTTGGTAAACAGTTGCCTGGACCGTTTCTCTGCGCCTCACA-------A 388
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
||| || | || |||||||||||||||||||||||| || |||||| |
Sbjct 389 ACAAGT------------GAGG-ACCCCTTCTCCCGAAGTTACGGGGTCAGTTTGCCTAG 435
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
|||||||||| | |||||||| |||||| |||| ||||||| |||||| |||||| ||
Sbjct 436 TTCCTTAACCGCGAGTCACCCGAGCGCCTTGGTATACTCTACCCGACCACGTGTGTCCGT 495
Query 241 TTACGGTA 248
||||||||
Sbjct 496 TTACGGTA 503
>seq4234
Length=168850
Score = 147 bits (162), Expect = 3e-33
Identities = 183/248 (74%), Gaps = 21/248 (8%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||||||||||| ||||| | |||||| || ||| | | ||||||||
Sbjct 86481 CTTAACCTTCCGGCACCGGGCAGGTGTCAGACTGTATACCGCGTCTTTC-GACTTCGCAC 86539
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| ||||||||||| |||||||| || | |||||||||||| || | |||
Sbjct 86540 AGCCCTGTGTTTTTGTTAAACAGTTGCCTGGACCTATTCTCTGCG----CCTC--GCTT- 86592
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| | | | || |||| || |||||||||||| ||| ||||||||| ||
Sbjct 86593 -----TCATAC-------GAGG-ACCCTTTATCCCGAAGTTACAGGGTCATTTTGCCTAA 86639
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
|||||||||| |||||| | ||||| ||||| ||| ||| |||||| |||||| ||
Sbjct 86640 TTCCTTAACCGTGAATCACCCAAGCGCCTCAGTATACTCAACCCGACCACGTGTGTCCGT 86699
Query 241 TTACGGTA 248
||||||||
Sbjct 86700 TTACGGTA 86707
>seq4660
Length=54038
Score = 143 bits (158), Expect = 4e-32
Identities = 178/248 (72%), Gaps = 22/248 (9%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| |||||||||||| ||||| || || || |||| || || ||
Sbjct 880 CTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATGTGTCATCTTAACGATTTAGCGT 939
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| | ||||||||| |||||||||||| | || ||||||||| ||||| |
Sbjct 940 AGCCATGTGTTTTTGGTAAACAGTCGCCTGGATCATTTCTCTGCGCCCACCTC------- 992
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
||| |||| ||||||||||||||||||||||| || |||||| |
Sbjct 993 --ACG-------------GTGGGTCCCCTTCTCCCGAAGTTACGGGGTCAATTTGCCTAG 1037
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| || ||||| ||| | |||||| ||||||| | | ||||||||||||||
Sbjct 1038 TTCCTTAGCCGTGATTCACTCGAGCACCTTAGGATTCTCTCCTCGCCCACCTGTGTCGGT 1097
Query 241 TTACGGTA 248
||||||||
Sbjct 1098 TTACGGTA 1105
>seq2436
Length=67316
Score = 123 bits (136), Expect = 3e-26
Identities = 177/249 (71%), Gaps = 24/249 (10%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| |||||||||||| ||||| || ||| || |||| || || ||
Sbjct 1843 CTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATATCTCATCTTAACGATTTAGCGT 1784
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| | ||||||||| |||||||||||| | | ||||||||| || |
Sbjct 1783 AGCCATGTGTTTTTGGTAAACAGTCGCCTGGGCCATTTCTCTGCGCCCTGC--------- 1733
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| ||||| | | |||||||||||||||||||||| | |||||| |
Sbjct 1732 ------CGA-----AGCAGGGTC--CCCTTCTCCCGAAGTTACGGGGTAAATTTGCCTAG 1686
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGG 239
||||||| ||| ||||| ||| | ||| || ||||||| ||| ||| |||||||||||
Sbjct 1685 TTCCTTAGCCATGATTCACTCGAGCACCTGAGGATTCTCT-CCTCACCCACCTGTGTCGG 1627
Query 240 TTTACGGTA 248
|||||||||
Sbjct 1626 TTTACGGTA 1618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694365699027
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |