Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq4374 156 6e-36 seq4234 147 3e-33 seq4660 143 4e-32 seq2436 123 3e-26 >seq4374 Length=59948 Score = 156 bits (172), Expect = 6e-36 Identities = 183/248 (74%), Gaps = 21/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||| ||||| | |||||| | | ||| | ||| |||| Sbjct 277 CTTAACCTTCCGGCACCGGGCAGGTGTCAGGCTGTATACGTGGCCTTCATG-CTTTGCAC 335 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||| || | | ||||||||| | || | Sbjct 336 AGCCCTGTGTTTTTGGTAAACAGTTGCCTGGACCGTTTCTCTGCGCCTCACA-------A 388 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| || | || |||||||||||||||||||||||| || |||||| | Sbjct 389 ACAAGT------------GAGG-ACCCCTTCTCCCGAAGTTACGGGGTCAGTTTGCCTAG 435 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||||||| | |||||||| |||||| |||| ||||||| |||||| |||||| || Sbjct 436 TTCCTTAACCGCGAGTCACCCGAGCGCCTTGGTATACTCTACCCGACCACGTGTGTCCGT 495 Query 241 TTACGGTA 248 |||||||| Sbjct 496 TTACGGTA 503 >seq4234 Length=168850 Score = 147 bits (162), Expect = 3e-33 Identities = 183/248 (74%), Gaps = 21/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||| ||||| | |||||| || ||| | | |||||||| Sbjct 86481 CTTAACCTTCCGGCACCGGGCAGGTGTCAGACTGTATACCGCGTCTTTC-GACTTCGCAC 86539 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||| || | |||||||||||| || | ||| Sbjct 86540 AGCCCTGTGTTTTTGTTAAACAGTTGCCTGGACCTATTCTCTGCG----CCTC--GCTT- 86592 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | | | || |||| || |||||||||||| ||| ||||||||| || Sbjct 86593 -----TCATAC-------GAGG-ACCCTTTATCCCGAAGTTACAGGGTCATTTTGCCTAA 86639 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||||||| |||||| | ||||| ||||| ||| ||| |||||| |||||| || Sbjct 86640 TTCCTTAACCGTGAATCACCCAAGCGCCTCAGTATACTCAACCCGACCACGTGTGTCCGT 86699 Query 241 TTACGGTA 248 |||||||| Sbjct 86700 TTACGGTA 86707 >seq4660 Length=54038 Score = 143 bits (158), Expect = 4e-32 Identities = 178/248 (72%), Gaps = 22/248 (9%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| |||||||||||| ||||| || || || |||| || || || Sbjct 880 CTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATGTGTCATCTTAACGATTTAGCGT 939 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| |||||||||||| | || ||||||||| ||||| | Sbjct 940 AGCCATGTGTTTTTGGTAAACAGTCGCCTGGATCATTTCTCTGCGCCCACCTC------- 992 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| |||| ||||||||||||||||||||||| || |||||| | Sbjct 993 --ACG-------------GTGGGTCCCCTTCTCCCGAAGTTACGGGGTCAATTTGCCTAG 1037 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| || ||||| ||| | |||||| ||||||| | | |||||||||||||| Sbjct 1038 TTCCTTAGCCGTGATTCACTCGAGCACCTTAGGATTCTCTCCTCGCCCACCTGTGTCGGT 1097 Query 241 TTACGGTA 248 |||||||| Sbjct 1098 TTACGGTA 1105 >seq2436 Length=67316 Score = 123 bits (136), Expect = 3e-26 Identities = 177/249 (71%), Gaps = 24/249 (10%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| |||||||||||| ||||| || ||| || |||| || || || Sbjct 1843 CTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATATCTCATCTTAACGATTTAGCGT 1784 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| |||||||||||| | | ||||||||| || | Sbjct 1783 AGCCATGTGTTTTTGGTAAACAGTCGCCTGGGCCATTTCTCTGCGCCCTGC--------- 1733 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || ||||| | | |||||||||||||||||||||| | |||||| | Sbjct 1732 ------CGA-----AGCAGGGTC--CCCTTCTCCCGAAGTTACGGGGTAAATTTGCCTAG 1686 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCTGTGTCGG 239 ||||||| ||| ||||| ||| | ||| || ||||||| ||| ||| ||||||||||| Sbjct 1685 TTCCTTAGCCATGATTCACTCGAGCACCTGAGGATTCTCT-CCTCACCCACCTGTGTCGG 1627 Query 240 TTTACGGTA 248 ||||||||| Sbjct 1626 TTTACGGTA 1618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694365699027