Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq4234 224 1e-56 seq4374 188 8e-46 seq4660 150 2e-34 seq2436 127 2e-27 >seq4234 Length=168850 Score = 224 bits (248), Expect = 1e-56 Identities = 156/175 (89%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||||||||||||| |||||||||| |||||| ||||||||| |||| ||||||||| Sbjct 86704 CGTAAACGGACACACGTGGTCGGGTTGAGTATACTGAGGCGCTTGGGTGATTCACGGTTA 86645 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||| |||||||| ||||||||||||||||||||||||||||| | | || | || Sbjct 86644 AGGAATTAGGCAAAATGACCCTGTAACTTCGGGATAAAGGGTCC--TCGTATGAAAGCGA 86587 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 86586 -GGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCGAA 86533 >seq4374 Length=59948 Score = 188 bits (208), Expect = 8e-46 Identities = 148/175 (85%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||||||||||||| ||||||| || ||||| |||||||| | |||| || |||||| Sbjct 500 CGTAAACGGACACACGTGGTCGGGTAGAGTATACCAAGGCGCTCGGGTGACTCGCGGTTA 441 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||||||||||||||||| |||||||||||| || |||||| | | || || Sbjct 440 AGGAACTAGGCAAACTGACCCCGTAACTTCGGGAGAAGGGGTCC--TCACTTGTTTGTGA 383 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||||||||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 382 -GGCGCAGAGAAACGGTCCAGGCAACTGTTTACCAAAAACACAGGGCTGTGCAAA 329 >seq4660 Length=54038 Score = 150 bits (166), Expect = 2e-34 Identities = 135/168 (80%), Gaps = 5/168 (3%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| || | || | || || |||||| ||| ||||||||||||| || Sbjct 1102 CGTAAACCGACACAGGTGGGCGAGGAGAGAATCCTAAGGTGCTCGAGTGAATCACGGCTA 1043 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| |||||| |||||||||||| || ||| ||| ||| || || Sbjct 1042 AGGAACTAGGCAAATTGACCCCGTAACTTCGGGAGAAGGGGACCC-ACCGTGA----GGT 988 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 |||||||||||| | ||||||| |||||||| |||||||||| |||| Sbjct 987 GGGCGCAGAGAAATGATCCAGGCGACTGTTTACCAAAAACACATGGCT 940 >seq2436 Length=67316 Score = 127 bits (140), Expect = 2e-27 Identities = 129/168 (77%), Gaps = 5/168 (3%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| || | | | || || || ||| ||| |||||||||| || || Sbjct 1621 CGTAAACCGACACAGGTGGGTGAGGAGAGAATCCTCAGGTGCTCGAGTGAATCATGGCTA 1680 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| | |||| |||||||||||| || ||| |||| | || | Sbjct 1681 AGGAACTAGGCAAATTTACCCCGTAACTTCGGGAGAAGGGG-----ACCCTGCTTCGGCA 1735 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 |||||||||||| || |||||| |||||||| |||||||||| |||| Sbjct 1736 GGGCGCAGAGAAATGGCCCAGGCGACTGTTTACCAAAAACACATGGCT 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531173760546