Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq4234 224 1e-56
seq4374 188 8e-46
seq4660 150 2e-34
seq2436 127 2e-27
>seq4234
Length=168850
Score = 224 bits (248), Expect = 1e-56
Identities = 156/175 (89%), Gaps = 3/175 (2%)
Strand=Plus/Minus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
|| |||||||||||||| |||||||||| |||||| ||||||||| |||| |||||||||
Sbjct 86704 CGTAAACGGACACACGTGGTCGGGTTGAGTATACTGAGGCGCTTGGGTGATTCACGGTTA 86645
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
||||| |||||||| ||||||||||||||||||||||||||||| | | || | ||
Sbjct 86644 AGGAATTAGGCAAAATGACCCTGTAACTTCGGGATAAAGGGTCC--TCGTATGAAAGCGA 86587
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 86586 -GGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCGAA 86533
>seq4374
Length=59948
Score = 188 bits (208), Expect = 8e-46
Identities = 148/175 (85%), Gaps = 3/175 (2%)
Strand=Plus/Minus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
|| |||||||||||||| ||||||| || ||||| |||||||| | |||| || ||||||
Sbjct 500 CGTAAACGGACACACGTGGTCGGGTAGAGTATACCAAGGCGCTCGGGTGACTCGCGGTTA 441
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
||||||||||||||||||||| |||||||||||| || |||||| | | || ||
Sbjct 440 AGGAACTAGGCAAACTGACCCCGTAACTTCGGGAGAAGGGGTCC--TCACTTGTTTGTGA 383
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
||||||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct 382 -GGCGCAGAGAAACGGTCCAGGCAACTGTTTACCAAAAACACAGGGCTGTGCAAA 329
>seq4660
Length=54038
Score = 150 bits (166), Expect = 2e-34
Identities = 135/168 (80%), Gaps = 5/168 (3%)
Strand=Plus/Minus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
|| |||| |||||| || | || | || || |||||| ||| ||||||||||||| ||
Sbjct 1102 CGTAAACCGACACAGGTGGGCGAGGAGAGAATCCTAAGGTGCTCGAGTGAATCACGGCTA 1043
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
|||||||||||||| |||||| |||||||||||| || ||| ||| ||| || ||
Sbjct 1042 AGGAACTAGGCAAATTGACCCCGTAACTTCGGGAGAAGGGGACCC-ACCGTGA----GGT 988
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
|||||||||||| | ||||||| |||||||| |||||||||| ||||
Sbjct 987 GGGCGCAGAGAAATGATCCAGGCGACTGTTTACCAAAAACACATGGCT 940
>seq2436
Length=67316
Score = 127 bits (140), Expect = 2e-27
Identities = 129/168 (77%), Gaps = 5/168 (3%)
Strand=Plus/Plus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
|| |||| |||||| || | | | || || || ||| ||| |||||||||| || ||
Sbjct 1621 CGTAAACCGACACAGGTGGGTGAGGAGAGAATCCTCAGGTGCTCGAGTGAATCATGGCTA 1680
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
|||||||||||||| | |||| |||||||||||| || ||| |||| | || |
Sbjct 1681 AGGAACTAGGCAAATTTACCCCGTAACTTCGGGAGAAGGGG-----ACCCTGCTTCGGCA 1735
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
|||||||||||| || |||||| |||||||| |||||||||| ||||
Sbjct 1736 GGGCGCAGAGAAATGGCCCAGGCGACTGTTTACCAAAAACACATGGCT 1783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531173760546
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |