Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4234 262 1e-67 seq4374 257 4e-66 seq2436 255 1e-65 seq4660 239 1e-60 >seq4234 Length=168850 Score = 262 bits (290), Expect = 1e-67 Identities = 318/429 (74%), Gaps = 28/429 (7%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTC-GGGTGGAGACAG 59 ||||| || | |||||||||| | | | ||||||||||| | ||| ||| ||||||| Sbjct 86286 CGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG-GGCTCACGGTTGAGACAG 86344 Query 60 CGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 119 | | ||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 86345 TGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 86404 Query 120 CTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC-GCGT 178 |||||||||||||| ||||||||||||||||||||||||||| || ||| |||| || | Sbjct 86405 CTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGACCTTCTGCCT 86464 Query 179 TAGC-TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 ||| ||| ||| | ||||||||||||||||||||||| |||| || ||||| | Sbjct 86465 AAGCATAAGCCCTCCTCTTAACCTTCCGGCACCGGGCAGGTGTCAGACTGTATACCGCGT 86524 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 |||||| || ||| || |||||||||| |||||||| || | ||| | ||| || Sbjct 86525 CTTTCGACTTCGCACAGCCCTGTGTTTTTGTTAAACAGTTGCCTGGACCTATTCTCTGCG 86584 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 | || | | ||| ||| ||||| || |||||||||| Sbjct 86585 CCTCGCTT--TCATAC-GAG---------GACCCT------------TTATCCCGAAGTT 86620 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 || | | | ||||||||| |||||| || || | ||||||||| |||| ||| | Sbjct 86621 ACAGGGTCATTTTGCCTAATTCCTTAACCGTGAATCACCCAAGCGCCTCAGTATACTCAA 86680 Query 418 CCCAACCAC 426 ||| ||||| Sbjct 86681 CCCGACCAC 86689 >seq4374 Length=59948 Score = 257 bits (284), Expect = 4e-66 Identities = 319/431 (74%), Gaps = 32/431 (7%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAG 59 ||||| || | ||||| |||| | | | ||||||||| | | |||| ||| ||||||| Sbjct 82 CGCGGGTAATCGGCATCATCACCGATACTACAATTTCACCGGG-CTCGCGGTTGAGACAG 140 Query 60 CGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 119 | | ||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 TGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 200 Query 120 CTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT 179 |||||||||||||| ||||||||||||||||||||||||||| | | | |||||| || Sbjct 201 CTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAACTCACACCTTCGCCTT 260 Query 180 --AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 ||| | | | | ||||||||||||||||||||||| |||| | ||||||| Sbjct 261 GCGGCTGAGCGCTCCTCTTAACCTTCCGGCACCGGGCAGGTGTCAGGCTGTATACGT-GG 319 Query 238 CTTTCGTG-TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296 | ||| || |||||| || |||||||||| |||||||| || | || || ||| Sbjct 320 CCTTCATGCTTTGCACAGCCCTGTGTTTTTGGTAAACAGTTGCCTGGACC--GTTTCT-- 375 Query 297 GACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGT 356 || || | | ||||| | | |||||||||||||| Sbjct 376 -------CTGCGCCTCACAAACAAGT-------------GAGGACCCCTTCTCCCGAAGT 415 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTT-CCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 ||||| | | ||||||||||||||| || |||| || | | ||||||||||||| ||| Sbjct 416 TACGGGGTCAGTTTGCCTAGTTCCTTAACCGCGAG-TCACCCGAGCGCCTTGGTATACTC 474 Query 416 TACCCAACCAC 426 ||||| ||||| Sbjct 475 TACCCGACCAC 485 >seq2436 Length=67316 Score = 255 bits (282), Expect = 1e-65 Identities = 312/427 (73%), Gaps = 29/427 (7%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| || | |||||||||| || | | ||||||||| ||| ||| || ||||||| Sbjct 2035 GCGGGTAGGCGGCATCTTCACCGCCACTACAATTTCACCGAG-CTCATGGCTGAGACAGT 1977 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1976 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1917 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||| | Sbjct 1916 TTAGGACCGTTATAGTTACGGCCGCCGTTTAACGGGGCTTCGATTCAGACCTTCGCTTGC 1857 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||| | ||| | ||||||||||| ||||||||||| |||| || ||| || ||| Sbjct 1856 GCTGAGCCCCCCTCTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATATCTCATCTT 1797 Query 241 -TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGAC 299 || || || || ||||||||| ||||||||||| |||| | ||| || | Sbjct 1796 AACGATTTAGCGTAGCCATGTGTTTTTGGTAAACAGTCGCCTGGGCCATTTCTCTGCGCC 1737 Query 300 CGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTAC 359 | || || |||| || | ||||||||||||||||| Sbjct 1736 CTGC---------CGAAGCA-----------------GGGTCCCCTTCTCCCGAAGTTAC 1703 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 || | ||||||||||||||| || ||| ||| ||| ||| | ||||||| | Sbjct 1702 GGGGTAAATTTGCCTAGTTCCTTAGCCATGATTCACTCGAGCACCTGAGGATTCTCTCCT 1643 Query 420 CAACCAC 426 || |||| Sbjct 1642 CACCCAC 1636 >seq4660 Length=54038 Score = 239 bits (264), Expect = 1e-60 Identities = 305/419 (73%), Gaps = 31/419 (7%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAG-TCTCGGGTGGAGACAGC 60 |||| || | |||||||||| || | | ||||||||| ||| || ||| || |||||| Sbjct 686 GCGGGTAGGCGGCATCTTCACCGCCACTACAATTTCACCGAGCTCACGGCTG-AGACAGT 744 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 745 ATCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 804 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179 ||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||| || Sbjct 805 TTAGGACCGTTATAGTTACGGCCGCCGTTTAACGGGGCTTCGATTCAGACCTTCGGCTTG 864 Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 |||| ||| | ||||||||||| ||||||||||| |||| || || ||| | Sbjct 865 CGCCTAAGCCCCCCTCTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATGTGTCATC 924 Query 239 TT-TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 || || || || || ||||||||| ||||||||||| | | | ||| || Sbjct 925 TTAACGATTTAGCGTAGCCATGTGTTTTTGGTAAACAGTCGCCTGGATCATTTCTCTGCG 984 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 || | || |||| | |||| ||||||||||||||| Sbjct 985 CCC------ACCTCACGGTG--GGTCC------------------CCTTCTCCCGAAGTT 1018 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 |||| | | ||||||||||||||| || ||| ||| ||| |||| | ||||||| Sbjct 1019 ACGGGGTCAATTTGCCTAGTTCCTTAGCCGTGATTCACTCGAGCACCTTAGGATTCTCT 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260735711808