Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq4234 262 1e-67
seq4374 257 4e-66
seq2436 255 1e-65
seq4660 239 1e-60
>seq4234
Length=168850
Score = 262 bits (290), Expect = 1e-67
Identities = 318/429 (74%), Gaps = 28/429 (7%)
Strand=Plus/Plus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTC-GGGTGGAGACAG 59
||||| || | |||||||||| | | | ||||||||||| | ||| ||| |||||||
Sbjct 86286 CGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG-GGCTCACGGTTGAGACAG 86344
Query 60 CGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 119
| | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86345 TGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 86404
Query 120 CTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC-GCGT 178
|||||||||||||| ||||||||||||||||||||||||||| || ||| |||| || |
Sbjct 86405 CTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGACCTTCTGCCT 86464
Query 179 TAGC-TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237
||| ||| ||| | ||||||||||||||||||||||| |||| || ||||| |
Sbjct 86465 AAGCATAAGCCCTCCTCTTAACCTTCCGGCACCGGGCAGGTGTCAGACTGTATACCGCGT 86524
Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297
|||||| || ||| || |||||||||| |||||||| || | ||| | ||| ||
Sbjct 86525 CTTTCGACTTCGCACAGCCCTGTGTTTTTGTTAAACAGTTGCCTGGACCTATTCTCTGCG 86584
Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357
| || | | ||| ||| ||||| || ||||||||||
Sbjct 86585 CCTCGCTT--TCATAC-GAG---------GACCCT------------TTATCCCGAAGTT 86620
Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417
|| | | | ||||||||| |||||| || || | ||||||||| |||| ||| |
Sbjct 86621 ACAGGGTCATTTTGCCTAATTCCTTAACCGTGAATCACCCAAGCGCCTCAGTATACTCAA 86680
Query 418 CCCAACCAC 426
||| |||||
Sbjct 86681 CCCGACCAC 86689
>seq4374
Length=59948
Score = 257 bits (284), Expect = 4e-66
Identities = 319/431 (74%), Gaps = 32/431 (7%)
Strand=Plus/Plus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAG 59
||||| || | ||||| |||| | | | ||||||||| | | |||| ||| |||||||
Sbjct 82 CGCGGGTAATCGGCATCATCACCGATACTACAATTTCACCGGG-CTCGCGGTTGAGACAG 140
Query 60 CGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 119
| | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 200
Query 120 CTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT 179
|||||||||||||| ||||||||||||||||||||||||||| | | | |||||| ||
Sbjct 201 CTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAACTCACACCTTCGCCTT 260
Query 180 --AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237
||| | | | | ||||||||||||||||||||||| |||| | |||||||
Sbjct 261 GCGGCTGAGCGCTCCTCTTAACCTTCCGGCACCGGGCAGGTGTCAGGCTGTATACGT-GG 319
Query 238 CTTTCGTG-TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296
| ||| || |||||| || |||||||||| |||||||| || | || || |||
Sbjct 320 CCTTCATGCTTTGCACAGCCCTGTGTTTTTGGTAAACAGTTGCCTGGACC--GTTTCT-- 375
Query 297 GACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGT 356
|| || | | ||||| | | ||||||||||||||
Sbjct 376 -------CTGCGCCTCACAAACAAGT-------------GAGGACCCCTTCTCCCGAAGT 415
Query 357 TACGGTGCCTTTTTGCCTAGTTCCTT-CCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415
||||| | | ||||||||||||||| || |||| || | | ||||||||||||| |||
Sbjct 416 TACGGGGTCAGTTTGCCTAGTTCCTTAACCGCGAG-TCACCCGAGCGCCTTGGTATACTC 474
Query 416 TACCCAACCAC 426
||||| |||||
Sbjct 475 TACCCGACCAC 485
>seq2436
Length=67316
Score = 255 bits (282), Expect = 1e-65
Identities = 312/427 (73%), Gaps = 29/427 (7%)
Strand=Plus/Minus
Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60
|||| || | |||||||||| || | | ||||||||| ||| ||| || |||||||
Sbjct 2035 GCGGGTAGGCGGCATCTTCACCGCCACTACAATTTCACCGAG-CTCATGGCTGAGACAGT 1977
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1917
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||| |
Sbjct 1916 TTAGGACCGTTATAGTTACGGCCGCCGTTTAACGGGGCTTCGATTCAGACCTTCGCTTGC 1857
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||| | ||| | ||||||||||| ||||||||||| |||| || ||| || |||
Sbjct 1856 GCTGAGCCCCCCTCTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATATCTCATCTT 1797
Query 241 -TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGAC 299
|| || || || ||||||||| ||||||||||| |||| | ||| || |
Sbjct 1796 AACGATTTAGCGTAGCCATGTGTTTTTGGTAAACAGTCGCCTGGGCCATTTCTCTGCGCC 1737
Query 300 CGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTAC 359
| || || |||| || | |||||||||||||||||
Sbjct 1736 CTGC---------CGAAGCA-----------------GGGTCCCCTTCTCCCGAAGTTAC 1703
Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
|| | ||||||||||||||| || ||| ||| ||| ||| | ||||||| |
Sbjct 1702 GGGGTAAATTTGCCTAGTTCCTTAGCCATGATTCACTCGAGCACCTGAGGATTCTCTCCT 1643
Query 420 CAACCAC 426
|| ||||
Sbjct 1642 CACCCAC 1636
>seq4660
Length=54038
Score = 239 bits (264), Expect = 1e-60
Identities = 305/419 (73%), Gaps = 31/419 (7%)
Strand=Plus/Plus
Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAG-TCTCGGGTGGAGACAGC 60
|||| || | |||||||||| || | | ||||||||| ||| || ||| || ||||||
Sbjct 686 GCGGGTAGGCGGCATCTTCACCGCCACTACAATTTCACCGAGCTCACGGCTG-AGACAGT 744
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 ATCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 804
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179
||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||| ||
Sbjct 805 TTAGGACCGTTATAGTTACGGCCGCCGTTTAACGGGGCTTCGATTCAGACCTTCGGCTTG 864
Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238
|||| ||| | ||||||||||| ||||||||||| |||| || || ||| |
Sbjct 865 CGCCTAAGCCCCCCTCTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATGTGTCATC 924
Query 239 TT-TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297
|| || || || || ||||||||| ||||||||||| | | | ||| ||
Sbjct 925 TTAACGATTTAGCGTAGCCATGTGTTTTTGGTAAACAGTCGCCTGGATCATTTCTCTGCG 984
Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357
|| | || |||| | |||| |||||||||||||||
Sbjct 985 CCC------ACCTCACGGTG--GGTCC------------------CCTTCTCCCGAAGTT 1018
Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416
|||| | | ||||||||||||||| || ||| ||| ||| |||| | |||||||
Sbjct 1019 ACGGGGTCAATTTGCCTAGTTCCTTAGCCGTGATTCACTCGAGCACCTTAGGATTCTCT 1077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260735711808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |