Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2436 347 3e-93 seq4234 327 2e-87 seq4374 318 1e-84 seq4660 298 1e-78 >seq2436 Length=67316 Score = 347 bits (384), Expect = 3e-93 Identities = 288/349 (83%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||||||| || | |||||||||||||| |||| Sbjct 2026 CGGCATCTTCACCGCCACTACAATTTCACCGAGCTCATGGCTGAGACAGTGCCCAGATCG 1967 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1966 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 1907 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT 184 ||||||||||||||||||||| ||||||| |||| ||||| |||| || | Sbjct 1906 TATAGTTACGGCCGCCGTTTAACGGGGCTTCGATTCAGACCTTCGCTTGCGCTGAGCCCC 1847 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT-GCGACTTAG 243 || ||||||||||| ||||||||||| ||||| | ||| || |||| ||| |||| Sbjct 1846 CCTCTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATATCTCATCTTAACGATTTAG 1787 Query 244 CAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGA 303 | | | |||||||||||||||||||||| |||||| ||||||||| |||| | || Sbjct 1786 CGTAGCCATGTGTTTTTGGTAAACAGTCGCCTGGGCCATTTCTCTGCGCCCTGCCGAAG- 1728 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||| ||||||||||| |||||||||||| | |||||| ||||||||| Sbjct 1727 CAGGGTCCCCTTCTCCCGAAGTTACGGGGTAAATTTGCCTAGTTCCTTA 1679 >seq4234 Length=168850 Score = 327 bits (362), Expect = 2e-87 Identities = 291/359 (81%), Gaps = 15/359 (4%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||| | | | |||||||||||| || ||| Sbjct 86296 CGGCATCTTCACCGATACTACAATTTCACTGGGCTCACGGTTGAGACAGTGTCCGGATCA 86355 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 86356 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 86415 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAA-CAGA 183 |||||||||||||||||||||| ||||||| | |||| |||| ||| |||| || | Sbjct 86416 TATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGACCTTC---TGC-CTAAGCATA 86471 Query 184 -----TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 ||| ||||||||||| |||||||||||| ||||| ||||| |||||| ||| Sbjct 86472 AGCCCTCCTCTTAACCTTCCGGCACCGGGCAGGTGTCAGACTGTATACCGCGTCTTTCGA 86531 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC---CT 295 ||| ||| | |||||||||||| |||||||| || ||| ||||||||||||| | || Sbjct 86532 CTTCGCACAGCCCTGTGTTTTTGTTAAACAGTTGCCTGGACCTATTCTCTGCGCCTCGCT 86591 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAAC 354 |||| || | |||| || |||| ||||||| ||||||||||||| | ||||||||| Sbjct 86592 TTCAT--ACGAGGACCCTTTATCCCGAAGTTACAGGGTCATTTTGCCTAATTCCTTAAC 86648 >seq4374 Length=59948 Score = 318 bits (352), Expect = 1e-84 Identities = 287/355 (81%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 ||||||| |||||| | ||||||||||||| | |||||||||||| || ||| Sbjct 92 CGGCATCATCACCGATACTACAATTTCACCGGGCTCGCGGTTGAGACAGTGTCCGGATCA 151 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 211 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGC-TCTAACAG 182 |||||||||||||||||||||| ||||||| | |||| ||||| |||| || | | Sbjct 212 TATAGTTACGGCCGCCGTTTACCGGGGCTTCAACTCACACCTTCGCCTTGCGGCTGAGCG 271 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 ||| ||||||||||| |||||||||||| ||||| ||||| | | ||| ||| Sbjct 272 CTCCTCTTAACCTTCCGGCACCGGGCAGGTGTCAGGCTGTATACGTGGCCTTCATGCTTT 331 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 ||| | ||||||||||||||||||||| || ||| || |||||||| |||| || | Sbjct 332 GCACAGCCCTGTGTTTTTGGTAAACAGTTGCCTGGACCGTTTCTCTGC-GCCTCACAAAC 390 Query 303 ACAG---GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAAC 354 | || | |||||||||||| |||||||||||||| |||||| ||||||||||| Sbjct 391 A-AGTGAGGACCCCTTCTCCCGAAGTTACGGGGTCAGTTTGCCTAGTTCCTTAAC 444 >seq4660 Length=54038 Score = 298 bits (330), Expect = 1e-78 Identities = 281/352 (80%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||||||| | | ||||||||| ||| |||| Sbjct 695 CGGCATCTTCACCGCCACTACAATTTCACCGAGCTCACGGCTGAGACAGTATCCAGATCG 754 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 814 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC-GATTGC-TCTAACAG 182 ||||||||||||||||||||| ||||||| |||| |||| | |||| |||| Sbjct 815 TATAGTTACGGCCGCCGTTTAACGGGGCTTCGATTCAGACCTTCGGCTTGCGCCTAAGCC 874 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT-GCGACTT 241 || ||||||||||| ||||||||||| ||||| | || || |||| ||| || Sbjct 875 CCCCTCTTAACCTTCCGTCACCGGGCAGGTGTCAGGCCACATGTGTCATCTTAACGATTT 934 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-TGTCAT 300 ||| | | |||||||||||||||||||||| ||| | ||||||||| || ||| Sbjct 935 AGCGTAGCCATGTGTTTTTGGTAAACAGTCGCCTGGATCATTTCTCTGCGCCCACCTCAC 994 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | || ||||||||||| |||||||||||||| |||||| ||||||||| Sbjct 995 GG--TGGGTCCCCTTCTCCCGAAGTTACGGGGTCAATTTGCCTAGTTCCTTA 1044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062345828224