Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq4910 336 7e-90
seq4660 329 1e-87
seq4374 293 7e-77
>seq4910
Length=11294
Score = 336 bits (372), Expect = 7e-90
Identities = 374/495 (76%), Gaps = 7/495 (1%)
Strand=Plus/Minus
Query 6 CCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGT 65
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1333 CCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGT 1274
Query 66 TTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCC-TCTAGA 124
||||||||| | |||||| |||||||||| ||||||| | | | | ||
Sbjct 1273 TTAATTCGATGGTACGCGAGGAACCTTACCTGGGTTTGACATACAGGGGGATGGTTTGGA 1214
Query 125 GATAGAGGTTTCCCCTT-CGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTC 183
|| || | ||| | || | || ||||||| ||||||| ||||||||||||
Sbjct 1213 GACAGGCCAGCCGGCTTGCCGGCCCCTGA---ACAGGTGCTGCATGGCTGTCGTCAGCTC 1157
Query 184 GTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCAT 243
||| |||||| |||||||||||||||||||||||||||||||| || |||| |||
Sbjct 1156 GTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTACTGCCAGTTACCAG 1097
Query 244 C--ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACG 301
| | ||| ||| ||||| |||||| ||||| ||||||||| ||||| |
Sbjct 1096 CGGGTAAAGCCGGGGACTCTGGCGGAACTGCCCCCGACAAGGGGGAGGAAGGCGGGGATG 1037
Query 302 ACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACA 361
||||||| |||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1036 ACGTCAAGTCATCATGGCCCTTATGTCCAGGGCTACACACGTGCTACAATGGCGGGGACA 977
Query 362 AAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGT 421
|| | |||| |||||||| |||| | | | ||| | ||||||||| |
Sbjct 976 GAGCGGGGCGAGGCCGCGAGGCGGAGCAGAGCGCGGAAATCCCGCCGTAGTTCGGATCGG 917
Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACG 481
|||||| ||| ||||| |||||||||||||||||||||||| ||||||| | ||
Sbjct 916 AGTCTGAAACCCGACTCCGTGAAGCTGGAATCGCTAGTAATCGCGCATCAGCACGGCGCG 857
Query 482 GTGAATACGTTCCCG 496
|||||||||||||||
Sbjct 856 GTGAATACGTTCCCG 842
>seq4660
Length=54038
Score = 329 bits (364), Expect = 1e-87
Identities = 382/502 (76%), Gaps = 10/502 (2%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 3630 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACAT 3571
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTC-TGACCCC- 118
|||||||||||||| | |||||| |||||||||| || || || |||
Sbjct 3570 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTCGAACGGCTGGTGAAGAGA 3511
Query 119 TCTAGAGATAGAGGTTTCCCCTTCGGGGGACAG-AGTGACAGGTGATGCATGGTTGTCGT 177
|| |||||| | | |||| ||||||| ||| ||| ||||| ||||||||||||||
Sbjct 3510 TCCAGAGATGGTGACGTCCC-TTCGGGG-ACACCAGTCG-AGGTGCTGCATGGTTGTCGT 3454
Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237
||||||||||||||||||||||| | |||| || |||||||||||||||| | |||
Sbjct 3453 CAGCTCGTGTCGTGAGATGTTGGCTCAAGTGCCATAACGAGCGCAACCCTTGCTGTCAGT 3394
Query 238 TGCCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295
| ||| ||| ||| | |||| ||||| | ||||||| | | |||||||| |
Sbjct 3393 TACCAGCATGTAATGATGGGGACTCTGACAGGACTGCCACCGTAAGGTGTGAGGAAGGCG 3334
Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355
|||| |||||||||||| || | |||||| | |||| ||||||||| ||||||||
Sbjct 3333 GGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCGACACACGTGTTACAATGGTG 3274
Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415
| |||| |||| || | |||| ||| |||| | |||| | ||||||||||
Sbjct 3273 ACTACAGAGGGATGCCACCTGGCGACAGGGAGCGAATCTCGAAAAG-TCATCTCAGTTCG 3215
Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CA 474
||| | |||||||||| ||||| |||||||||| ||||||||||||| ||||| ||
Sbjct 3214 GATCGAAGTCTGCAACCCGACTTCGTGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCA 3155
Query 475 TGCTACGGTGAATACGTTCCCG 496
|| |||||||||||||||||
Sbjct 3154 TGGCGCGGTGAATACGTTCCCG 3133
>seq4374
Length=59948
Score = 293 bits (324), Expect = 7e-77
Identities = 375/504 (74%), Gaps = 17/504 (3%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| | |||| | |||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 3341 TACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACAT 3282
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCT-CTGACCCCT 119
|||||||||||||| | |||||| |||||||||| ||||| || || ||| |
Sbjct 3281 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAAATGCTACTG---GCG 3225
Query 120 CTAGAGATAGAGGTTTCC--CCTTCGGGGGACAG-AGTGACAGGTGATGCATGGTTGTCG 176
|||| ||| | || |||||||| ||| |||| ||||| |||||||||||||
Sbjct 3224 GGGGAGAGAGACCTCCCCCTCCTTCGGG---CAGTAGTG-TAGGTGCTGCATGGTTGTCG 3169
Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236
|||||||||| |||||| ||| || | |||| || |||||||||||||| | | ||
Sbjct 3168 TCAGCTCGTGCCGTGAGGTGTCGGCTCAAGTGCCATAACGAGCGCAACCCCTGTCCCCAG 3109
Query 237 TTGCCATC--ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGG 293
||||| || | || ||||||||| | ||||||| | ||| || ||||||||
Sbjct 3108 TTGCCGTCGGGTAGAGCCGGGCACTCTGTGGATACTGCCGCCG-CAAGGCGTGAGGAAGG 3050
Query 294 TGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353
|||||| |||||||||||| || | |||||| | |||| ||||||||| ||||||||
Sbjct 3049 TGGGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCCACACACGTGTTACAATGG 2990
Query 354 ACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413
||| | || | | | |||| | | ||| || |||| || |||||
Sbjct 2989 GGGGCACAGCGAGCTGGGTCATGGCGACATGTCCCGAAT-CCTTAAATCCCCTCCCAGTT 2931
Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG- 472
|||| | |||||||||| ||||| ||||||||| ||||||||||||| |||||
Sbjct 2930 CGGACAGGAGTCTGCAACCCGACTCCTCGAAGCTGGATTCGCTAGTAATCGCGCATCAGC 2871
Query 473 CATGCTACGGTGAATACGTTCCCG 496
|||| |||||||||||||||||
Sbjct 2870 CATGGCGCGGTGAATACGTTCCCG 2847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503923311040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |