Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq4660 174 3e-41
seq2436 165 2e-38
seq4234 156 8e-36
>seq4660
Length=54038
Score = 174 bits (192), Expect = 3e-41
Identities = 167/214 (78%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185
||| ||||||||||||| |||||||||| |||||||||||||||| || ||| | | ||
Sbjct 507 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCCCAAGGTCCGCT 448
Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245
|||| |||||| || | ||| | |||||| |||| ||| | | ||||||| || ||
Sbjct 447 CAGCGCGGATGGCAATCGCGCGAAGAGTGCAGTGGCATAAGCGGGCTTGACTGGGAGACA 388
Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305
|||||| |||||| |||||||| |||| | |||||||| ||| | ||||| | |||
Sbjct 387 AACAAGTCGAGCAGGTACGAAAGTAGGGCAAAGTGATCCGGTGGTTCCCAATGGGAGGGC 328
Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| |||||| ||||||||| ||| | |||||||
Sbjct 327 CATCGCTCATAGGATAAAAGGTACTCCGGGGATA 294
>seq2436
Length=67316
Score = 165 bits (182), Expect = 2e-38
Identities = 165/214 (77%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185
||| ||||||||||||| |||||||||| |||| ||||||||||| || ||| | | ||
Sbjct 2213 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGCGTAACGGAGGCTTCCCAAGGTCCGCT 2272
Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245
|||| |||||| || | ||| | |||||| |||| ||| | | ||||||| || ||
Sbjct 2273 CAGCGCGGATGGCAATCGCGCGTAGAGTGCAGTGGCATAAGCGGGCTTGACTGAGAGACT 2332
Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305
| |||||| | |||| |||||||| |||| | |||||||| ||| | |||| | |||
Sbjct 2333 CACAAGTCGATCAGGTACGAAAGTAGGGCAAAGTGATCCGGTGGTTCCTCATGGGAGGGC 2392
Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| |||||| ||||||||| ||| | |||||||
Sbjct 2393 CATCGCTCATAGGATAAAAGGTACTCCGGGGATA 2426
>seq4234
Length=168850
Score = 156 bits (172), Expect = 8e-36
Identities = 165/215 (77%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185
||| ||||||||||||| |||||||||| |||| ||||||||||| || |||| ||||||
Sbjct 86107 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGCGTAACGGAGGCTCCTAAAGGTACCCT 86048
Query 186 CAGCTTGGATGGAAACCATGCG-CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244
|| | ||| |||| ||| || |||| || |||||||||||| ||||||| || |
Sbjct 86047 CACGCCGATTGGTAACCG-GCGTCAGAGTGTAATGGCAAAAGGGTGCTTGACTGGGAGGC 85989
Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304
|| | | |||| |||| | || || |||||||||||| | | |||||| ||
Sbjct 85988 AGACATGCCGCACAGGTGGGAAACCAGAGCATAGTGATCCGGCGGTTCCGTATGGAAGGG 85929
Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||||||||| | ||||||||| ||| | |||||||
Sbjct 85928 CCGTCGCTCAAAGGATAAAAGGTACTCCGGGGATA 85894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982349907424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |