Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3891 188 2e-45 seq2219 183 7e-44 seq4660 172 1e-40 seq4374 156 9e-36 seq2332 145 2e-32 seq4681 132 1e-28 seq4910 123 5e-26 >seq3891 Length=32788 Score = 188 bits (208), Expect = 2e-45 Identities = 209/275 (76%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 67 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGAC 126 |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||| | Sbjct 32788 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGC 32729 Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 | ||| |||||||| | | ||| |||||||||||||||| ||| |||||||||||||| Sbjct 32728 CGGTCACCCTCTCAGGTCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACT 32669 Query 187 AGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGC----CCGAAGGTCCCCTGCTTTC 242 |||||||| ||| || ||||| ||| || || | | | | | ||| Sbjct 32668 AGCTAATCAGACGCGGGTCCATCTTATACCGAAAAACTTTTCACACTATGTCATGCGACA 32609 Query 243 TCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGC 302 | ||| | | |||||||||||||| ||||||| | ||||| |||| || ||| Sbjct 32608 T--CGT-GCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTATTCCCCTGTATAAGGT 32552 Query 303 AGATT-CCTAGGCATTACTCACCCGTCCGCCGCTC 336 || || || | || ||||||||||||||||| ||| Sbjct 32551 AGGTTACCCACGCGTTACTCACCCGTCCGCCACTC 32517 >seq2219 Length=5028 Score = 183 bits (202), Expect = 7e-44 Identities = 215/287 (75%), Gaps = 13/287 (5%) Strand=Plus/Plus Query 58 CCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 117 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 3 CCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 62 Query 118 CAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177 || |||| | | ||| |||||||| || | ||| |||||||| |||||| ||| ||||| Sbjct 63 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTAGGCCGTTACC 122 Query 178 TCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAA-------GGCCCGAAGG 230 ||||||||| |||||| ||| || |||| |||| | || || | Sbjct 123 CCACCAACTATCTAATCAGACGCGAGCCCATCCTTAAGCGATAAATCTTTGGTACG--GT 180 Query 231 TCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCC 290 | ||| | | ||||| |||||||||||| |||||||||| || |||||| Sbjct 181 TATGATGCCATAT-CCGTA--CATTATGCGGTATTACTGTCCGTTTCCAGACACTATCCC 237 Query 291 CCACTACCAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCTC 336 |||| ||||| || || | || ||||||||||||||||| ||| Sbjct 238 ACACTTAAGGGCAGGTTGCTCACGCGTTACTCACCCGTCCGCCACTC 284 >seq4660 Length=54038 Score = 172 bits (190), Expect = 1e-40 Identities = 138/165 (84%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| |||||| |||| ||| || |||||| |||||||||| |||||||||||| Sbjct 4107 CACGCGGCAT-GGCTGGTTCAGCCTTCCGGCCATTGACCAATATTCCTCACTGCTGCCTC 4165 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||| |||||||||||||||||||| |||| || | |||||||||| | | Sbjct 4166 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 4225 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 | ||||| ||||||||| ||| ||||| | ||||| ||||||| Sbjct 4226 AGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAAT 4270 >seq4374 Length=59948 Score = 156 bits (172), Expect = 9e-36 Identities = 122/142 (86%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGA-CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| ||| || ||||| | | | ||||| | |||||||| |||||||| ||||| Sbjct 3792 TTTACAACCCGTAGGGCCTTCATCC-CGCACGCTAC-TTGGCTGGTTCAGGCTTGCGCCC 3849 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 3850 ATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 3909 Query 121 TGTGACTGATCATCCTCTCAGA 142 |||| || | |||||||||| Sbjct 3910 TGTGGGGGACCTTCCTCTCAGA 3931 >seq2332 Length=45074 Score = 145 bits (160), Expect = 2e-32 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 |||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct 45074 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCC 45015 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 | |||| | || |||||||||| | || | ||||| || |||||| ||| |||||| Sbjct 45014 AATGTGGGGGGTCTTCCTCTCAGAACCCCTAGGCATCGTAGCTTTGGTGGGCCGTTACCT 44955 Query 179 CACCAACTAGCTAAT 193 |||||||| |||||| Sbjct 44954 CACCAACTGGCTAAT 44940 >seq4681 Length=18840 Score = 132 bits (146), Expect = 1e-28 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 |||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 18840 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 18781 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 || | |||||||||| | || ||||| ||||||||| ||| ||||| | ||||| | Sbjct 18780 GACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAA 18721 Query 188 GCTAAT 193 |||||| Sbjct 18720 GCTAAT 18715 >seq4910 Length=11294 Score = 123 bits (136), Expect = 5e-26 Identities = 127/165 (77%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||| | | || ||| |||||||| ||||| ||||||| |||||||||| Sbjct 1820 CACGCGGCGTCG-CTCCGTCACGCTTTCGCGCATTGCGGAATATTCTTAGCTGCTGCCTC 1878 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||| ||||||| ||| |||| | | ||| |||||||| || | | Sbjct 1879 CCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGCCCGCTCACCCTCTCAGGCCGGAT 1938 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 || || ||||||||||| || |||| | ||||| |||| || Sbjct 1939 ACCCGTCATCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTGAT 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071945338720