Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq3891 188 2e-45
seq2219 183 7e-44
seq4660 172 1e-40
seq4374 156 9e-36
seq2332 145 2e-32
seq4681 132 1e-28
seq4910 123 5e-26
>seq3891
Length=32788
Score = 188 bits (208), Expect = 2e-45
Identities = 209/275 (76%), Gaps = 8/275 (3%)
Strand=Plus/Minus
Query 67 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGAC 126
|||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||| |
Sbjct 32788 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGC 32729
Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186
| ||| |||||||| | | ||| |||||||||||||||| ||| ||||||||||||||
Sbjct 32728 CGGTCACCCTCTCAGGTCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACT 32669
Query 187 AGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGC----CCGAAGGTCCCCTGCTTTC 242
|||||||| ||| || ||||| ||| || || | | | | | |||
Sbjct 32668 AGCTAATCAGACGCGGGTCCATCTTATACCGAAAAACTTTTCACACTATGTCATGCGACA 32609
Query 243 TCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGC 302
| ||| | | |||||||||||||| ||||||| | ||||| |||| || |||
Sbjct 32608 T--CGT-GCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTATTCCCCTGTATAAGGT 32552
Query 303 AGATT-CCTAGGCATTACTCACCCGTCCGCCGCTC 336
|| || || | || ||||||||||||||||| |||
Sbjct 32551 AGGTTACCCACGCGTTACTCACCCGTCCGCCACTC 32517
>seq2219
Length=5028
Score = 183 bits (202), Expect = 7e-44
Identities = 215/287 (75%), Gaps = 13/287 (5%)
Strand=Plus/Plus
Query 58 CCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 117
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 3 CCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 62
Query 118 CAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177
|| |||| | | ||| |||||||| || | ||| |||||||| |||||| ||| |||||
Sbjct 63 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTAGGCCGTTACC 122
Query 178 TCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAA-------GGCCCGAAGG 230
||||||||| |||||| ||| || |||| |||| | || || |
Sbjct 123 CCACCAACTATCTAATCAGACGCGAGCCCATCCTTAAGCGATAAATCTTTGGTACG--GT 180
Query 231 TCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCC 290
| ||| | | ||||| |||||||||||| |||||||||| || ||||||
Sbjct 181 TATGATGCCATAT-CCGTA--CATTATGCGGTATTACTGTCCGTTTCCAGACACTATCCC 237
Query 291 CCACTACCAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCTC 336
|||| ||||| || || | || ||||||||||||||||| |||
Sbjct 238 ACACTTAAGGGCAGGTTGCTCACGCGTTACTCACCCGTCCGCCACTC 284
>seq4660
Length=54038
Score = 172 bits (190), Expect = 1e-40
Identities = 138/165 (84%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||| |||||| |||| ||| || |||||| |||||||||| ||||||||||||
Sbjct 4107 CACGCGGCAT-GGCTGGTTCAGCCTTCCGGCCATTGACCAATATTCCTCACTGCTGCCTC 4165
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||| |||||||||||||||||||| |||| || | |||||||||| | |
Sbjct 4166 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 4225
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
| ||||| ||||||||| ||| ||||| | ||||| |||||||
Sbjct 4226 AGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAAT 4270
>seq4374
Length=59948
Score = 156 bits (172), Expect = 9e-36
Identities = 122/142 (86%), Gaps = 3/142 (2%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGA-CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
||||||| ||| || ||||| | | | ||||| | |||||||| |||||||| |||||
Sbjct 3792 TTTACAACCCGTAGGGCCTTCATCC-CGCACGCTAC-TTGGCTGGTTCAGGCTTGCGCCC 3849
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3850 ATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 3909
Query 121 TGTGACTGATCATCCTCTCAGA 142
|||| || | ||||||||||
Sbjct 3910 TGTGGGGGACCTTCCTCTCAGA 3931
>seq2332
Length=45074
Score = 145 bits (160), Expect = 2e-32
Identities = 113/135 (84%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
|||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 45074 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCC 45015
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
| |||| | || |||||||||| | || | ||||| || |||||| ||| ||||||
Sbjct 45014 AATGTGGGGGGTCTTCCTCTCAGAACCCCTAGGCATCGTAGCTTTGGTGGGCCGTTACCT 44955
Query 179 CACCAACTAGCTAAT 193
|||||||| ||||||
Sbjct 44954 CACCAACTGGCTAAT 44940
>seq4681
Length=18840
Score = 132 bits (146), Expect = 1e-28
Identities = 105/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127
|||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 18840 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 18781
Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187
|| | |||||||||| | || ||||| ||||||||| ||| ||||| | ||||| |
Sbjct 18780 GACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAA 18721
Query 188 GCTAAT 193
||||||
Sbjct 18720 GCTAAT 18715
>seq4910
Length=11294
Score = 123 bits (136), Expect = 5e-26
Identities = 127/165 (77%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||| | | || ||| |||||||| ||||| ||||||| ||||||||||
Sbjct 1820 CACGCGGCGTCG-CTCCGTCACGCTTTCGCGCATTGCGGAATATTCTTAGCTGCTGCCTC 1878
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||| ||||||| ||| |||| | | ||| |||||||| || | |
Sbjct 1879 CCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGCCCGCTCACCCTCTCAGGCCGGAT 1938
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
|| || ||||||||||| || |||| | ||||| |||| ||
Sbjct 1939 ACCCGTCATCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTGAT 1983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071945338720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |