Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq4241 100 1e-18 seq240 87.8 7e-15 >seq4241 Length=93636 Score = 100 bits (110), Expect = 1e-18 Identities = 263/392 (67%), Gaps = 16/392 (4%) Strand=Plus/Minus Query 166 GTAGTTGCCCGGGAACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACAC 225 ||||||||| | ||||| | | | |||| |||| | ||| | |||| || || || Sbjct 73618 GTAGTTGCCTGCGAACATGGTGACTTTGCCGAAGTCGATGTCGACGGTGTGCGTGCATAC 73559 Query 226 GCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAG---GCTGGAACGCTGGGT 282 || || ||||||||||||||||| || || || | ||| | | ||| || | | Sbjct 73558 GCAGTCGAGGAAGTGACGGTCGTGGCTGACGACGAGGA-CAGTGTGTTCGAA--CTCGCT 73502 Query 283 CAGGATATT-TTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGA 341 || |||||| ||||| ||| ||| ||| | || ||| | || |||||| || ||||||| Sbjct 73501 CA-GATATTGTTCCAACCACTGGACGGTATCGAGGTCGAGGTCGTTGGTAGGCTCGTCGA 73443 Query 342 GCAACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGC--TTCCA 399 ||| ||| || |||| | || || |||| ||||||| || |||| | |||| Sbjct 73442 GCAGCAGGTTATCTGGATTGCCGAAGAGTGCCTTTGCCAGCATGACGCGCACCTTTTCCT 73383 Query 400 GCCCGGGGACACTTCGCTCATCGGACCGAAGTGC--TGCTCCAGCGGAATACCCAGACCC 457 || || | |||| ||| | | ||||| |||| | || || || || Sbjct 73382 TACC--CGAGAGCTCGCCCATGAGCTGGTAGTGCTTTGCTTC--TTTTATGCCGAGGCCG 73327 Query 458 AGCAGCAGCTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTT 517 ||||| || |||| | || || |||||| ||||||||||||||| | Sbjct 73326 GAGAGCAGTGCAGCGGCGTCGCTCTCAGCCTCGTAGCCACCCATCTCGGCGAACTTCTCT 73267 Query 518 TCCAGCTCGGCCACGGCCATGCCGTCTTCTTC 549 ||||||||||| ||| ||||||||||| || Sbjct 73266 TCCAGCTCGGCGACGCGTATGCCGTCTTCGTC 73235 >seq240 Length=9876 Score = 87.8 bits (96), Expect = 7e-15 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 166 GTAGTTGCCCGGGAACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACAC 225 ||||||||| | ||||| || | | | |||||| | ||| | |||| ||| || || Sbjct 1610 GTAGTTGCCAGAGAACATACGGATTTTGTTGTAGTCGATGTCGACGATGTCGGTGCAGAC 1669 Query 226 GCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCT--GGAACGCTGGGTC 283 | ||| |||||||| ||||||||||||| || ||| | | | | || | | ||| | Sbjct 1670 GTTGTCGAGGAAGTGTCGGTCGTGAGAGACGACGATGA-CGGTATTGGGGAAGTTGG--C 1726 Query 284 AGGATATT-TTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAG 342 | |||| ||| |||||| ||| |||| || ||| | || |||||| ||||||||||| Sbjct 1727 GAGGTATTCTTCGAGCCAGAGGACTGTGTCGAGGTCGAGGTCGTTGGTGGGTTCGTCGAG 1786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881501059004