Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4374 306 1e-80 seq4234 288 4e-75 seq2436 280 5e-73 seq4660 275 2e-71 >seq4374 Length=59948 Score = 306 bits (338), Expect = 1e-80 Identities = 369/493 (75%), Gaps = 18/493 (4%) Strand=Plus/Plus Query 105 CAGT-GCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGA 163 |||| ||||||||||| | | ||||| | || |||||||||||| |||||||||| Sbjct 1243 CAGTCGCTCTACCTCCTGAGCGGAACACCACAGGCAGCACCTAAATGCTTTTCGGGGAGT 1302 Query 164 ACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTT 223 || ||||||| | |||||||||||||||||| |||| || || |||||| || Sbjct 1303 ACGAGCTATCTCCGGGTTTGATTGGCCTTTCACTCCTACCCGCACCTCATCCGGAAGCTT 1362 Query 224 TTCAAC-CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 |||||| || | | ||||||| |||||| | | ||||| | ||||| |||| || | Sbjct 1363 TTCAACGCTTA-TCGGTTCGGCCCTCCATCCCGCGTTACCGGGACTTCAGCCTGGGCACG 1421 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 | |||||||| | |||| |||| | ||||| |||| || ||| |||||| Sbjct 1422 GGTAGATCACCCGGTTTCGCGTCTGCCGCCACAGACTCA-ACGCACTCTTCATGCTCGCT 1480 Query 343 TTCGCTACGGCTAC----CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGC 398 ||| || ||||| | | || || | |||||||||| ||| |||||| |||| Sbjct 1481 TTCACTTCGGCTGCGCGGCTCATACCGCTTAACCTCGC-CGGTGACGGCAACTCGTAGGC 1539 Query 399 TCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGAT 458 ||||| | |||||||||||||||||| | || || || |||||||||| | | Sbjct 1540 TCATTATGCAAAAGGCACGCCGTCAC----TGCCACAACGG----ACAGCTCCGACAGCT 1591 Query 459 TGTAGGCACATGGTTTCAGGTACTATTTCACTCC-CCGCCAGGGGTACTTTTCACCTTTC 517 ||||||| |||||||||||||||| ||||||||| | || || ||| ||||||||||||| Sbjct 1592 TGTAGGCGCATGGTTTCAGGTACTCTTTCACTCCTCTGCGAGAGGTGCTTTTCACCTTTC 1651 Query 518 CCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||||||||||| |||| ||||||||| | |||| ||||| ||| ||| ||||||| Sbjct 1652 CCTCACGGTACTGGTCCACTATCGGTCTCTGGAGAGTGTTTAGCCTTGGCGGATGGTCCC 1711 Query 578 GCCAGATTCACAC 590 ||| ||||||||| Sbjct 1712 GCCGGATTCACAC 1724 >seq4234 Length=168850 Score = 288 bits (318), Expect = 4e-75 Identities = 397/545 (73%), Gaps = 24/545 (4%) Strand=Plus/Plus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111 |||||||||||||| || | | || || ||| |||| | ||| |||| ||| Sbjct 87393 GCATTCGGAGTTTGTCTGGACTTGATAGGCG-GTGAAGCCCTCGCATCCAATCAGTCGCT 87451 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||||| ||||||| | | || |||||||||||| |||||||||| || ||||| Sbjct 87452 CTACCTCACAAGAGAAACATCCCAGGCGGCACCTAAATGCCTTTCGGGGAGTACGAGCTA 87511 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC-C 230 || | ||||||||||||||||||| |||| |||| ||||| |||||||| | Sbjct 87512 TCTCCGAGTTTGATTGGCCTTTCACTCCTACACACACCTCATCGGGAAGCTTTTCAACGC 87571 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | | | || ||| |||||| | || ||||| | ||||| |||| |||| |||||| Sbjct 87572 TTA-TCCGTGCGGACCTCCATCCCGTGTTACCGGGACTTCATCCTGGACATGTGTAGATC 87630 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCA-TACGCCCTATTCGGACTCGCTTTCGCTA 349 ||| | |||| |||| | | ||||| | ||||| ||| |||||||||||||| Sbjct 87631 ACTCGGTTTCGCGTCTGCCCCCTCTGACTCACTTCGCCCCTTTCAGACTCGCTTTCGCTG 87690 Query 350 CGGCT-----ACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTC 404 ||||| | | | ||||||| || | | | |||| |||| ||| ||||| Sbjct 87691 CGGCTCGGGAAGTCTATCTTCCTTAACCTTGCCAGAGATGGCAA-CTCGTAGGTTCATTA 87749 Query 405 TTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGG 464 | |||||||||||||||||| ||| |||||| |||||||| | ||||||| Sbjct 87750 TGCAAAAGGCACGCCGTCAC-----ACCATAAAGGC------GCTCCGACCGCTTGTAGG 87798 Query 465 CACATGGTTTCAGGTACTATTTCACTCCCCGCC-AGGGGTACTTTTCACCTTTCCCTCAC 523 | ||||||||||||||| |||||||||| | | |||| ||||||||||||||||||| Sbjct 87799 CGTATGGTTTCAGGTACTCTTTCACTCCCGTACTACGGGTCCTTTTCACCTTTCCCTCAC 87858 Query 524 GGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGA 583 |||||| || | ||||||||| | | ||||||||| ||| ||| |||||||| | || Sbjct 87859 GGTACTGGTTCACTATCGGTCTCTCACTAGTATTTAGCCTTGCCGGATGGTCCCGGCGGA 87918 Query 584 TTCAC 588 ||||| Sbjct 87919 TTCAC 87923 >seq2436 Length=67316 Score = 280 bits (310), Expect = 5e-73 Identities = 344/465 (74%), Gaps = 20/465 (4%) Strand=Plus/Minus Query 133 CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTT 192 ||| |||| |||||| |||||||||||| || ||||||| | ||||||||||||||| Sbjct 879 CGAGGCTGTCCCTAAAGACATTTCGGGGAGTACGAGCTATCTCCCAGTTTGATTGGCCTT 820 Query 193 TCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACG 252 |||| |||| ||||| |||||| | |||||||| || ||||||| |||||| | Sbjct 819 TCACTCCTACCCACAACTCATCCAAGCCCTTTTCAACGGAAACTGGTTCGGGCCTCCATG 760 Query 253 CGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGAT 310 || ||||| | ||||| |||| ||||| ||||||||| | |||| ||| || | Sbjct 759 GCGTGTTACCGCCACTTCACCCTGGTCATGGGTAGATCACTAGGTTTCGCGTCTGTTCCT 700 Query 311 CGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCAC----ACGGG 366 ||| | || |||||| ||| |||||||| ||||||||||| | ||| | | Sbjct 699 TGTGACTATC-GGCGCCCTGTTCAGACTCGCTCTCGCTACGGCTTACGCACCTGAAGTGC 641 Query 367 TTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 |||||||||| ||| | |||||| ||||||||| | |||||||||||||||| Sbjct 640 TTAACCTCGCCACAAAGATACAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTC---- 585 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTT 486 | ||| | | | |||||||| | ||||| | | |||||||||| || ||| Sbjct 584 -GCGCCT-TACGAC------GCTCCGACCGCTTGTAAACGAACGGTTTCAGGTTCTGTTT 533 Query 487 CACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||| || ||||| ||| |||||||||||||||||||| |||| ||||||||| Sbjct 532 CACTCCCCTGCTCGGGGTGCTTCCCACCTTTCCCTCACGGTACTGGTCCACTATCGGTCT 473 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 | ||||| ||||| ||| || ||||||| |||||||| || Sbjct 472 TCCGGGAGTGTTTAGCCTTGCGGGATGGTCCCCGCAGATTCAGAC 428 >seq4660 Length=54038 Score = 275 bits (304), Expect = 2e-71 Identities = 430/599 (72%), Gaps = 26/599 (4%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||| | ||||| ||| | |||| | ||||| ||| ||| | || | ||||||| Sbjct 1716 TCGCCGACGGATATTAG-CACCCGACGACTCACTCCCGGAATCTGAATTGCGCGCATTCG 1774 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 ||||||| || ||| || || |||| || || |||| |||||||||| Sbjct 1775 GAGTTTGTCAGAAATCGATAGGCGATGAAGCCCTCTTTTCCTATCAGTAGCTCTACCTCA 1834 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 | || | || ||| |||| |||||| |||||||||||| || ||||||| | || Sbjct 1835 CGCAATCATAAC-CGAGGCTGTCCCTAAAGACATTTCGGGGAGTACGAGCTATCTCCCAG 1893 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||||||||||||| |||| |||||| |||||| | |||||||| || ||| Sbjct 1894 TTTGATTGGCCTTTCACTCCTACCCACAGCTCATCCAAGCCCTTTTCAACGGAAACTGGT 1953 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||| |||||| | |||| ||||| |||| |||||| ||||||||| | || Sbjct 1954 TCGGGCCTCCAGTACCTGTTACGGTACCTTCACCCTGGCCATGGGTAGATCACTAGGTTT 2013 Query 300 CGGGTCTTGATCGTGC-CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGC-TAC- 356 || ||| || ||| | ||||| |||||| ||| |||||||| ||||| |||| ||| Sbjct 2014 CGCGTC-TGCTCGCACTGACTCAAGCGCCCTGTTCAGACTCGCTCTCGCTGCGGCTTACG 2072 Query 357 -CCCACACGG-GTTAACCTCGCGA-CACAACGCAAACTCGCAGGCTCATTCTTCAAAAGG 413 ||| | || |||||||||| | ||| || |||||| ||||||||| | ||||||| Sbjct 2073 TCCCTGAAGGACTTAACCTCGCCAGTGCAATGC-AACTCGTAGGCTCATTATGCAAAAGG 2131 Query 414 CACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTT 473 ||||||||| | ||| || | |||||||| | ||||| | | |||| Sbjct 2132 CACGCCGTC-----GCACCCGAAGG-------TGCTCCGACCGCTTGTAAACGAACGGTT 2179 Query 474 TCAGGTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGT 532 |||||| || ||||||||||| ||| ||||| ||| |||||||||||||||||||| || Sbjct 2180 TCAGGTTCTGTTTCACTCCCCTGCCCGGGGTGCTTCCCACCTTTCCCTCACGGTACTGGT 2239 Query 533 CCGCTATCGGTC-ACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 || ||||||||| || | | ||||||| ||| | ||||| | |||||||| || Sbjct 2240 CCACTATCGGTCTTCCGATCA-TATTTAGCCTTGCGGCATGGTCGCCGCAGATTCAGAC 2297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817507320576