Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq4374 306 1e-80
seq4234 288 4e-75
seq2436 280 5e-73
seq4660 275 2e-71
>seq4374
Length=59948
Score = 306 bits (338), Expect = 1e-80
Identities = 369/493 (75%), Gaps = 18/493 (4%)
Strand=Plus/Plus
Query 105 CAGT-GCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGA 163
|||| ||||||||||| | | ||||| | || |||||||||||| ||||||||||
Sbjct 1243 CAGTCGCTCTACCTCCTGAGCGGAACACCACAGGCAGCACCTAAATGCTTTTCGGGGAGT 1302
Query 164 ACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTT 223
|| ||||||| | |||||||||||||||||| |||| || || |||||| ||
Sbjct 1303 ACGAGCTATCTCCGGGTTTGATTGGCCTTTCACTCCTACCCGCACCTCATCCGGAAGCTT 1362
Query 224 TTCAAC-CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282
|||||| || | | ||||||| |||||| | | ||||| | ||||| |||| || |
Sbjct 1363 TTCAACGCTTA-TCGGTTCGGCCCTCCATCCCGCGTTACCGGGACTTCAGCCTGGGCACG 1421
Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342
| |||||||| | |||| |||| | ||||| |||| || ||| ||||||
Sbjct 1422 GGTAGATCACCCGGTTTCGCGTCTGCCGCCACAGACTCA-ACGCACTCTTCATGCTCGCT 1480
Query 343 TTCGCTACGGCTAC----CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGC 398
||| || ||||| | | || || | |||||||||| ||| |||||| ||||
Sbjct 1481 TTCACTTCGGCTGCGCGGCTCATACCGCTTAACCTCGC-CGGTGACGGCAACTCGTAGGC 1539
Query 399 TCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGAT 458
||||| | |||||||||||||||||| | || || || |||||||||| | |
Sbjct 1540 TCATTATGCAAAAGGCACGCCGTCAC----TGCCACAACGG----ACAGCTCCGACAGCT 1591
Query 459 TGTAGGCACATGGTTTCAGGTACTATTTCACTCC-CCGCCAGGGGTACTTTTCACCTTTC 517
||||||| |||||||||||||||| ||||||||| | || || ||| |||||||||||||
Sbjct 1592 TGTAGGCGCATGGTTTCAGGTACTCTTTCACTCCTCTGCGAGAGGTGCTTTTCACCTTTC 1651
Query 518 CCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577
|||||||||||| |||| ||||||||| | |||| ||||| ||| ||| |||||||
Sbjct 1652 CCTCACGGTACTGGTCCACTATCGGTCTCTGGAGAGTGTTTAGCCTTGGCGGATGGTCCC 1711
Query 578 GCCAGATTCACAC 590
||| |||||||||
Sbjct 1712 GCCGGATTCACAC 1724
>seq4234
Length=168850
Score = 288 bits (318), Expect = 4e-75
Identities = 397/545 (73%), Gaps = 24/545 (4%)
Strand=Plus/Plus
Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111
|||||||||||||| || | | || || ||| |||| | ||| |||| |||
Sbjct 87393 GCATTCGGAGTTTGTCTGGACTTGATAGGCG-GTGAAGCCCTCGCATCCAATCAGTCGCT 87451
Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171
||||||| ||||||| | | || |||||||||||| |||||||||| || |||||
Sbjct 87452 CTACCTCACAAGAGAAACATCCCAGGCGGCACCTAAATGCCTTTCGGGGAGTACGAGCTA 87511
Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC-C 230
|| | ||||||||||||||||||| |||| |||| ||||| |||||||| |
Sbjct 87512 TCTCCGAGTTTGATTGGCCTTTCACTCCTACACACACCTCATCGGGAAGCTTTTCAACGC 87571
Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290
| | | || ||| |||||| | || ||||| | ||||| |||| |||| ||||||
Sbjct 87572 TTA-TCCGTGCGGACCTCCATCCCGTGTTACCGGGACTTCATCCTGGACATGTGTAGATC 87630
Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCA-TACGCCCTATTCGGACTCGCTTTCGCTA 349
||| | |||| |||| | | ||||| | ||||| ||| ||||||||||||||
Sbjct 87631 ACTCGGTTTCGCGTCTGCCCCCTCTGACTCACTTCGCCCCTTTCAGACTCGCTTTCGCTG 87690
Query 350 CGGCT-----ACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTC 404
||||| | | | ||||||| || | | | |||| |||| ||| |||||
Sbjct 87691 CGGCTCGGGAAGTCTATCTTCCTTAACCTTGCCAGAGATGGCAA-CTCGTAGGTTCATTA 87749
Query 405 TTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGG 464
| |||||||||||||||||| ||| |||||| |||||||| | |||||||
Sbjct 87750 TGCAAAAGGCACGCCGTCAC-----ACCATAAAGGC------GCTCCGACCGCTTGTAGG 87798
Query 465 CACATGGTTTCAGGTACTATTTCACTCCCCGCC-AGGGGTACTTTTCACCTTTCCCTCAC 523
| ||||||||||||||| |||||||||| | | |||| |||||||||||||||||||
Sbjct 87799 CGTATGGTTTCAGGTACTCTTTCACTCCCGTACTACGGGTCCTTTTCACCTTTCCCTCAC 87858
Query 524 GGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGA 583
|||||| || | ||||||||| | | ||||||||| ||| ||| |||||||| | ||
Sbjct 87859 GGTACTGGTTCACTATCGGTCTCTCACTAGTATTTAGCCTTGCCGGATGGTCCCGGCGGA 87918
Query 584 TTCAC 588
|||||
Sbjct 87919 TTCAC 87923
>seq2436
Length=67316
Score = 280 bits (310), Expect = 5e-73
Identities = 344/465 (74%), Gaps = 20/465 (4%)
Strand=Plus/Minus
Query 133 CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTT 192
||| |||| |||||| |||||||||||| || ||||||| | |||||||||||||||
Sbjct 879 CGAGGCTGTCCCTAAAGACATTTCGGGGAGTACGAGCTATCTCCCAGTTTGATTGGCCTT 820
Query 193 TCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACG 252
|||| |||| ||||| |||||| | |||||||| || ||||||| |||||| |
Sbjct 819 TCACTCCTACCCACAACTCATCCAAGCCCTTTTCAACGGAAACTGGTTCGGGCCTCCATG 760
Query 253 CGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGAT 310
|| ||||| | ||||| |||| ||||| ||||||||| | |||| ||| || |
Sbjct 759 GCGTGTTACCGCCACTTCACCCTGGTCATGGGTAGATCACTAGGTTTCGCGTCTGTTCCT 700
Query 311 CGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCAC----ACGGG 366
||| | || |||||| ||| |||||||| ||||||||||| | ||| | |
Sbjct 699 TGTGACTATC-GGCGCCCTGTTCAGACTCGCTCTCGCTACGGCTTACGCACCTGAAGTGC 641
Query 367 TTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426
|||||||||| ||| | |||||| ||||||||| | ||||||||||||||||
Sbjct 640 TTAACCTCGCCACAAAGATACAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTC---- 585
Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTT 486
| ||| | | | |||||||| | ||||| | | |||||||||| || |||
Sbjct 584 -GCGCCT-TACGAC------GCTCCGACCGCTTGTAAACGAACGGTTTCAGGTTCTGTTT 533
Query 487 CACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545
|||||||| || ||||| ||| |||||||||||||||||||| |||| |||||||||
Sbjct 532 CACTCCCCTGCTCGGGGTGCTTCCCACCTTTCCCTCACGGTACTGGTCCACTATCGGTCT 473
Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590
| ||||| ||||| ||| || ||||||| |||||||| ||
Sbjct 472 TCCGGGAGTGTTTAGCCTTGCGGGATGGTCCCCGCAGATTCAGAC 428
>seq4660
Length=54038
Score = 275 bits (304), Expect = 2e-71
Identities = 430/599 (72%), Gaps = 26/599 (4%)
Strand=Plus/Plus
Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60
||| | ||||| ||| | |||| | ||||| ||| ||| | || | |||||||
Sbjct 1716 TCGCCGACGGATATTAG-CACCCGACGACTCACTCCCGGAATCTGAATTGCGCGCATTCG 1774
Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119
||||||| || ||| || || |||| || || |||| ||||||||||
Sbjct 1775 GAGTTTGTCAGAAATCGATAGGCGATGAAGCCCTCTTTTCCTATCAGTAGCTCTACCTCA 1834
Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179
| || | || ||| |||| |||||| |||||||||||| || ||||||| | ||
Sbjct 1835 CGCAATCATAAC-CGAGGCTGTCCCTAAAGACATTTCGGGGAGTACGAGCTATCTCCCAG 1893
Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239
||||||||||||||||| |||| |||||| |||||| | |||||||| || |||
Sbjct 1894 TTTGATTGGCCTTTCACTCCTACCCACAGCTCATCCAAGCCCTTTTCAACGGAAACTGGT 1953
Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299
|||| |||||| | |||| ||||| |||| |||||| ||||||||| | ||
Sbjct 1954 TCGGGCCTCCAGTACCTGTTACGGTACCTTCACCCTGGCCATGGGTAGATCACTAGGTTT 2013
Query 300 CGGGTCTTGATCGTGC-CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGC-TAC- 356
|| ||| || ||| | ||||| |||||| ||| |||||||| ||||| |||| |||
Sbjct 2014 CGCGTC-TGCTCGCACTGACTCAAGCGCCCTGTTCAGACTCGCTCTCGCTGCGGCTTACG 2072
Query 357 -CCCACACGG-GTTAACCTCGCGA-CACAACGCAAACTCGCAGGCTCATTCTTCAAAAGG 413
||| | || |||||||||| | ||| || |||||| ||||||||| | |||||||
Sbjct 2073 TCCCTGAAGGACTTAACCTCGCCAGTGCAATGC-AACTCGTAGGCTCATTATGCAAAAGG 2131
Query 414 CACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTT 473
||||||||| | ||| || | |||||||| | ||||| | | ||||
Sbjct 2132 CACGCCGTC-----GCACCCGAAGG-------TGCTCCGACCGCTTGTAAACGAACGGTT 2179
Query 474 TCAGGTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGT 532
|||||| || ||||||||||| ||| ||||| ||| |||||||||||||||||||| ||
Sbjct 2180 TCAGGTTCTGTTTCACTCCCCTGCCCGGGGTGCTTCCCACCTTTCCCTCACGGTACTGGT 2239
Query 533 CCGCTATCGGTC-ACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590
|| ||||||||| || | | ||||||| ||| | ||||| | |||||||| ||
Sbjct 2240 CCACTATCGGTCTTCCGATCA-TATTTAGCCTTGCGGCATGGTCGCCGCAGATTCAGAC 2297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817507320576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |