Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq2436 196 1e-47
seq4660 181 3e-43
seq4234 181 3e-43
seq4374 161 2e-37
>seq2436
Length=67316
Score = 196 bits (216), Expect = 1e-47
Identities = 292/399 (73%), Gaps = 19/399 (5%)
Strand=Plus/Minus
Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACC-CAACCTTTCAACCTGCC 88
|||||||||| | ||||||| |||||| || |||||| | || |||| ||||
Sbjct 790 TTTTCAACGGAAACTGGTTCGGGCCTCCATGGCGT-GTTACCGCCAC--TTCACCCTGGT 734
Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTA--GACGCCCTAGTAA 146
||| || |||||| | ||||| || |||| || || | ||||| | |||||| | |
Sbjct 733 CATGGG-TAGATCACTAGGTTT-CGCGTCTGTT-CCTTGTGACTATCGGCGCCCTGTTCA 677
Query 147 GACTCGCTTTTCGCTACGCCT----CCCCT-ATTCGGTTAAGCTTTGCCACTGAAA-ATA 200
|||||||| | ||||||| || | ||| | | |||| || ||||| | | | |
Sbjct 676 GACTCGCTCT-CGCTACGGCTTACGCACCTGAAGTGCTTAACCTC-GCCACAAAGATACA 619
Query 201 AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCT 260
| ||| | | |||||| ||||||| |||| ||| | | | | ||||| || |||
Sbjct 618 ACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCGCGC--CTTACGACGCTCCGACCGCT 561
Query 261 TGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320
|||| | ||||||||||| ||| |||||||||||| |||||| ||| | ||||||
Sbjct 560 TGTAAACGAACGGTTTCAGGTTCTGTTTCACTCCCCTGCTCGGGGTGCTTCCCACCTTTC 501
Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCC 380
|||||||||||| || ||||||||||| | | ||| |||||||||| ||||||||||
Sbjct 500 CCTCACGGTACTGGTCCACTATCGGTCTTCCGGGAGTGTTTAGCCTTGCGGGATGGTCCC 441
Query 381 CCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
| || ||||||||| || ||||||| ||| |||||||
Sbjct 440 CGCAGATTCAGACAGGATTCCTCGTGCCCCGCCCTACTC 402
>seq4660
Length=54038
Score = 181 bits (200), Expect = 3e-43
Identities = 285/396 (72%), Gaps = 14/396 (4%)
Strand=Plus/Plus
Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89
|||||||||| | ||||||| |||||||| | ||||| ||||| || |||| ||
Sbjct 1936 TTTTCAACGGAAACTGGTTCGGGCCTCCAGTACCT-GTTACGGTACCTT-CACCCTGGCC 1993
Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA-CGCCCTAGTAAGA 148
|| || |||||| | ||||| || |||| | | || |||| | |||||| | |||
Sbjct 1994 ATGGG-TAGATCACTAGGTTT-CGCGTCTGCT-CGCACTGACTCAAGCGCCCTGTTCAGA 2050
Query 149 CTCGCTTTTCGCTACGCCTC----CCCTATTCGGTTAAGCTTTGCCACTGAAAAT-AAGT 203
|||||| | |||| || || |||| | | | | | |||| || || || |
Sbjct 2051 CTCGCTCT-CGCTGCGGCTTACGTCCCTGAAGGACTTAACCTCGCCAGTGCAATGCAACT 2109
Query 204 CGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGT 263
|| | | |||||| ||||||| |||| ||| | | || ||| |||| || ||||||
Sbjct 2110 CGTAGGCTCATTATGCAAAAGGCACGCCGTCGCACCCGAAGGTG--CTCCGACCGCTTGT 2167
Query 264 ACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCT 323
| | ||||||||||| ||| |||||||||||| ||||||| ||| | |||||||||
Sbjct 2168 AAACGAACGGTTTCAGGTTCTGTTTCACTCCCCTGCCCGGGGTGCTTCCCACCTTTCCCT 2227
Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCC 383
||||||||| || ||||||||||| | | |||||||||||| | |||||| || |
Sbjct 2228 CACGGTACTGGTCCACTATCGGTCTTCCGATCATATTTAGCCTTGCGGCATGGTCGCCGC 2287
Query 384 ATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
| ||||||||| || | |||| ||| |||||||
Sbjct 2288 AGATTCAGACAGGATTCCACGTGTCCCGCCCTACTC 2323
>seq4234
Length=168850
Score = 181 bits (200), Expect = 3e-43
Identities = 168/209 (80%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 212 CATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATAC 271
|||||| ||||||| |||| ||||| | | |||| | ||||| || ||||||| || ||
Sbjct 87745 CATTATGCAAAAGGCACGCCGTCACACCATAAAG-GCGCTCCGACCGCTTGTAGGCGTAT 87803
Query 272 GGTTTCAGGATCTATTTCACTCCCCT-CTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330
||||||||| || |||||||||| | || |||| | |||||| ||||||||||||||||
Sbjct 87804 GGTTTCAGGTACTCTTTCACTCCCGTACTACGGG-TCCTTTTCACCTTTCCCTCACGGTA 87862
Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390
|| |||||||||||||| ||| ||||||||||||||| |||||||||| | |||||
Sbjct 87863 CTGGTTCACTATCGGTCTCTCACTAGTATTTAGCCTTGCCGGATGGTCCCGGCGGATTCA 87922
Query 391 GACAAAGTTTCTCGTGCTCCGTCCTACTC 419
|| ||||||||| ||| ||||||
Sbjct 87923 CGCAGGATTTCTCGTGACCCGCGCTACTC 87951
>seq4374
Length=59948
Score = 161 bits (178), Expect = 2e-37
Identities = 282/397 (71%), Gaps = 14/397 (4%)
Strand=Plus/Plus
Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89
||||||||| | ||||||||| |||||| | |||||| ||| || |||| |
Sbjct 1361 TTTTCAACGCTTATCGGTTCGGCCCTCCATCCCGC-GTTACCGGGACTT-CAGCCTGGGC 1418
Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGAC 149
| || |||||| |||||||| || |||| || | |||| |||| || | | |
Sbjct 1419 ACGGG-TAGATCACCCGGTTT-CGCGTCTGCCGCC-ACAGACTCAACGCACTCTTCATGC 1475
Query 150 TCGCTTT----TCG-CTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTC 204
||||||| ||| || ||| | | || || |||| || ||| ||| || ||
Sbjct 1476 TCGCTTTCACTTCGGCTGCGCGGCTCATAC-CGCTTAACCTC-GCCGGTGACGGCAACTC 1533
Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACC-CAACAAAGTGG-GCTCCCACTGCTTG 262
| | | |||||| ||||||| |||| ||||| | |||| | ||||| || |||||
Sbjct 1534 GTAGGCTCATTATGCAAAAGGCACGCCGTCACTGCCACAACGGACAGCTCCGACAGCTTG 1593
Query 263 TACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCC 322
|| || | ||||||||| || ||||||||| || | ||| |||||| ||||||||
Sbjct 1594 TAGGCGCATGGTTTCAGGTACTCTTTCACTCCTCTGCGAGAGGTGCTTTTCACCTTTCCC 1653
Query 323 TCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382
|||||||||| || ||||||||||| | ||| ||||||||||| |||||||||| |
Sbjct 1654 TCACGGTACTGGTCCACTATCGGTCTCTGGAGAGTGTTTAGCCTTGGCGGATGGTCCCGC 1713
Query 383 CATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
| ||||| ||| ||| | ||||| ||| ||||||
Sbjct 1714 CGGATTCACACAGGGTTCCACGTGCCCCGCGCTACTC 1750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241536690816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |