Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2436 196 1e-47 seq4660 181 3e-43 seq4234 181 3e-43 seq4374 161 2e-37 >seq2436 Length=67316 Score = 196 bits (216), Expect = 1e-47 Identities = 292/399 (73%), Gaps = 19/399 (5%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACC-CAACCTTTCAACCTGCC 88 |||||||||| | ||||||| |||||| || |||||| | || |||| |||| Sbjct 790 TTTTCAACGGAAACTGGTTCGGGCCTCCATGGCGT-GTTACCGCCAC--TTCACCCTGGT 734 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTA--GACGCCCTAGTAA 146 ||| || |||||| | ||||| || |||| || || | ||||| | |||||| | | Sbjct 733 CATGGG-TAGATCACTAGGTTT-CGCGTCTGTT-CCTTGTGACTATCGGCGCCCTGTTCA 677 Query 147 GACTCGCTTTTCGCTACGCCT----CCCCT-ATTCGGTTAAGCTTTGCCACTGAAA-ATA 200 |||||||| | ||||||| || | ||| | | |||| || ||||| | | | | Sbjct 676 GACTCGCTCT-CGCTACGGCTTACGCACCTGAAGTGCTTAACCTC-GCCACAAAGATACA 619 Query 201 AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCT 260 | ||| | | |||||| ||||||| |||| ||| | | | | ||||| || ||| Sbjct 618 ACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCGCGC--CTTACGACGCTCCGACCGCT 561 Query 261 TGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTC 320 |||| | ||||||||||| ||| |||||||||||| |||||| ||| | |||||| Sbjct 560 TGTAAACGAACGGTTTCAGGTTCTGTTTCACTCCCCTGCTCGGGGTGCTTCCCACCTTTC 501 Query 321 CCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCC 380 |||||||||||| || ||||||||||| | | ||| |||||||||| |||||||||| Sbjct 500 CCTCACGGTACTGGTCCACTATCGGTCTTCCGGGAGTGTTTAGCCTTGCGGGATGGTCCC 441 Query 381 CCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | || ||||||||| || ||||||| ||| ||||||| Sbjct 440 CGCAGATTCAGACAGGATTCCTCGTGCCCCGCCCTACTC 402 >seq4660 Length=54038 Score = 181 bits (200), Expect = 3e-43 Identities = 285/396 (72%), Gaps = 14/396 (4%) Strand=Plus/Plus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 |||||||||| | ||||||| |||||||| | ||||| ||||| || |||| || Sbjct 1936 TTTTCAACGGAAACTGGTTCGGGCCTCCAGTACCT-GTTACGGTACCTT-CACCCTGGCC 1993 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA-CGCCCTAGTAAGA 148 || || |||||| | ||||| || |||| | | || |||| | |||||| | ||| Sbjct 1994 ATGGG-TAGATCACTAGGTTT-CGCGTCTGCT-CGCACTGACTCAAGCGCCCTGTTCAGA 2050 Query 149 CTCGCTTTTCGCTACGCCTC----CCCTATTCGGTTAAGCTTTGCCACTGAAAAT-AAGT 203 |||||| | |||| || || |||| | | | | | |||| || || || | Sbjct 2051 CTCGCTCT-CGCTGCGGCTTACGTCCCTGAAGGACTTAACCTCGCCAGTGCAATGCAACT 2109 Query 204 CGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGT 263 || | | |||||| ||||||| |||| ||| | | || ||| |||| || |||||| Sbjct 2110 CGTAGGCTCATTATGCAAAAGGCACGCCGTCGCACCCGAAGGTG--CTCCGACCGCTTGT 2167 Query 264 ACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCT 323 | | ||||||||||| ||| |||||||||||| ||||||| ||| | ||||||||| Sbjct 2168 AAACGAACGGTTTCAGGTTCTGTTTCACTCCCCTGCCCGGGGTGCTTCCCACCTTTCCCT 2227 Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCC 383 ||||||||| || ||||||||||| | | |||||||||||| | |||||| || | Sbjct 2228 CACGGTACTGGTCCACTATCGGTCTTCCGATCATATTTAGCCTTGCGGCATGGTCGCCGC 2287 Query 384 ATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | ||||||||| || | |||| ||| ||||||| Sbjct 2288 AGATTCAGACAGGATTCCACGTGTCCCGCCCTACTC 2323 >seq4234 Length=168850 Score = 181 bits (200), Expect = 3e-43 Identities = 168/209 (80%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 212 CATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATAC 271 |||||| ||||||| |||| ||||| | | |||| | ||||| || ||||||| || || Sbjct 87745 CATTATGCAAAAGGCACGCCGTCACACCATAAAG-GCGCTCCGACCGCTTGTAGGCGTAT 87803 Query 272 GGTTTCAGGATCTATTTCACTCCCCT-CTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 ||||||||| || |||||||||| | || |||| | |||||| |||||||||||||||| Sbjct 87804 GGTTTCAGGTACTCTTTCACTCCCGTACTACGGG-TCCTTTTCACCTTTCCCTCACGGTA 87862 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390 || |||||||||||||| ||| ||||||||||||||| |||||||||| | ||||| Sbjct 87863 CTGGTTCACTATCGGTCTCTCACTAGTATTTAGCCTTGCCGGATGGTCCCGGCGGATTCA 87922 Query 391 GACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || ||||||||| ||| |||||| Sbjct 87923 CGCAGGATTTCTCGTGACCCGCGCTACTC 87951 >seq4374 Length=59948 Score = 161 bits (178), Expect = 2e-37 Identities = 282/397 (71%), Gaps = 14/397 (4%) Strand=Plus/Plus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| | ||||||||| |||||| | |||||| ||| || |||| | Sbjct 1361 TTTTCAACGCTTATCGGTTCGGCCCTCCATCCCGC-GTTACCGGGACTT-CAGCCTGGGC 1418 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGAC 149 | || |||||| |||||||| || |||| || | |||| |||| || | | | Sbjct 1419 ACGGG-TAGATCACCCGGTTT-CGCGTCTGCCGCC-ACAGACTCAACGCACTCTTCATGC 1475 Query 150 TCGCTTT----TCG-CTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTC 204 ||||||| ||| || ||| | | || || |||| || ||| ||| || || Sbjct 1476 TCGCTTTCACTTCGGCTGCGCGGCTCATAC-CGCTTAACCTC-GCCGGTGACGGCAACTC 1533 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACC-CAACAAAGTGG-GCTCCCACTGCTTG 262 | | | |||||| ||||||| |||| ||||| | |||| | ||||| || ||||| Sbjct 1534 GTAGGCTCATTATGCAAAAGGCACGCCGTCACTGCCACAACGGACAGCTCCGACAGCTTG 1593 Query 263 TACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCC 322 || || | ||||||||| || ||||||||| || | ||| |||||| |||||||| Sbjct 1594 TAGGCGCATGGTTTCAGGTACTCTTTCACTCCTCTGCGAGAGGTGCTTTTCACCTTTCCC 1653 Query 323 TCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382 |||||||||| || ||||||||||| | ||| ||||||||||| |||||||||| | Sbjct 1654 TCACGGTACTGGTCCACTATCGGTCTCTGGAGAGTGTTTAGCCTTGGCGGATGGTCCCGC 1713 Query 383 CATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | ||||| ||| ||| | ||||| ||| |||||| Sbjct 1714 CGGATTCACACAGGGTTCCACGTGCCCCGCGCTACTC 1750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241536690816