Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2219 356 5e-96 seq3891 269 5e-70 seq2332 165 2e-38 seq4910 154 3e-35 seq4660 143 5e-32 seq4681 132 1e-28 seq4374 111 3e-22 >seq2219 Length=5028 Score = 356 bits (394), Expect = 5e-96 Identities = 254/292 (87%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 22 CCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 81 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 60 Query 82 CCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTA 141 ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| Sbjct 61 CCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTAGGCCGTTA 120 Query 142 TCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAG 201 | ||||||||| |||||| | |||||||||||| || ||||||||||||||||| Sbjct 121 CCCCACCAACTATCTAATCAGACGCGAGCCCATCCTTAAGCGATAAATCTTTGGTACGGT 180 Query 202 AATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACT 261 |||||||||| | |||||||||||||||| || |||||||| || ||| |||| Sbjct 181 TATGATGCCATATCCGTACATTATGCGGTATTACTGTCCGTTTCCAGACACTATCCCACA 240 Query 262 CTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAAGCTATAT 313 || || ||||||||||||||| ||||||||||||||||||||| || |||| Sbjct 241 CTTAAGGGCAGGTTGCTCACGCGTTACTCACCCGTCCGCCACTCAGTCATAT 292 >seq3891 Length=32788 Score = 269 bits (298), Expect = 5e-70 Identities = 237/288 (82%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 33 CAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 32788 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGC 32729 Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 || ||| |||||||| ||||||| |||||||| |||||||||| ||| |||||||||| Sbjct 32728 CGGTCACCCTCTCAGGTCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACT 32669 Query 153 ACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATG--ATGCC 210 | |||||| | |||| | ||||||| | ||| ||| |||| ||| | ||| |||| Sbjct 32668 AGCTAATCAGACGCGGGTCCATCTTATACCGA-AAAACTTT--TCACACTATGTCATGCG 32612 Query 211 ATCCTC-TGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGG 269 | | || || ||||||||||||||| |||||||||| |||||||| || | |||| Sbjct 32611 A-CATCGTGCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTATTCCCCTGTATAAGG 32553 Query 270 CAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAAG-CTATATATC 316 ||||| | |||| ||||||||||||||||||||| || | ||| ||| Sbjct 32552 TAGGTTACCCACGCGTTACTCACCCGTCCGCCACTCAGTCAATAAATC 32505 >seq2332 Length=45074 Score = 165 bits (182), Expect = 2e-38 Identities = 207/279 (74%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 25 CCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 84 |||||| |||||| || |||||||||||||||||||||| ||||||||||||||||||| Sbjct 45074 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCC 45015 Query 85 AATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCT 144 ||||||| | || |||||||| | ||| ||||| | ||||||||| ||| || Sbjct 45014 AATGTGGGGGGTCTTCCTCTCAGAACCCCTAGGCATCGTAGCTTTGGTGGGCCGTTACCT 44955 Query 145 CACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA--GCGATAAATCTTTGGTCAAAGA 202 |||||||| ||||| |||||||| ||| ||| || ||| | ||| | || | Sbjct 44954 CACCAACTGGCTAATGCCACGCGAGCCAATCCGTCATCGCCGTAACT-TTTACACTAA-A 44897 Query 203 ATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTC 262 ||| || | || | ||||| ||||||| |||||||||| ||| || | Sbjct 44896 GCCATG-CAACTTCAGTGGTTATGGGGTATTACGCATCGTTTCCAATGACTATCCCCCAA 44838 Query 263 TGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCC 301 ||| |||| |||||||||| ||||| ||||| |||||| Sbjct 44837 TGACGGGCATGTTGCTCACGCGTTACGCACCCTTCCGCC 44799 >seq4910 Length=11294 Score = 154 bits (170), Expect = 3e-35 Identities = 222/311 (71%), Gaps = 9/311 (3%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||||||| | ||| | |||| | ||||| | ||||| | |||||||||||||||| Sbjct 1825 GGCGTCGCTCCGTCACGCTTTCGCGCATTGCGGAATATTCTTAGCTGCTGCCTCCCGTAG 1884 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||| |||||||||||||||| ||| ||| |||||||| |||| |||| | Sbjct 1885 GAGTCTGGGCCGTATCTCAGTCCCAATGTGCCCGCTCACCCTCTCAGGCCGGATACCCGT 1944 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||||| | ||| | ||||| | || || |||||| ||| || | | Sbjct 1945 CATCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTGATGGGCCGCAGGCCGCTCCTCCG 2004 Query 181 GCG-----ATAAATCTTTGGTCAAAGAATGATGCCATCCTCT--GACATTATGCGGTATT 233 ||| ||| | || || | || | ||| | | | ||| |||| ||||||| Sbjct 2005 GCGGGGCAATAGCCCCTT--TCCTCGCATAACTCCAGCTTATGCGACCTTATCCGGTATT 2062 Query 234 AGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACC 293 | | | ||||||| | | ||| || || | || || | |||||||||||||| Sbjct 2063 ACCCTGTGTTTCCACAGGCTATCCCCGTCCAGAGGGTGCGTCACCTACGTGTTACTCACC 2122 Query 294 CGTCCGCCACT 304 ||||||| || Sbjct 2123 AGTCCGCCGCT 2133 >seq4660 Length=54038 Score = 143 bits (158), Expect = 5e-32 Identities = 218/306 (71%), Gaps = 11/306 (4%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||| || | |||||| |||||| || |||||||||||||||||| Sbjct 4112 GGCATGGCTGGTTCAGCCTTCCGGCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 4171 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||| |||||||||||| ||||||||| | | |||||||| | ||| || Sbjct 4172 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTAGACAT 4231 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC--TTT 178 ||| | |||||||||| ||| | | ||||| | ||||| |||||||| ||| | | Sbjct 4232 CGTAGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAATGTCTCGCGAGCCTATCCGTAT 4291 Query 179 CAGCGATAAATCTTTGGTCAAAGAA---TGATGCCATCCTCTGACATTATGCGGTATTAG 235 | || || ||| ||||| || | ||| | |||||| ||||| |||||||| Sbjct 4292 CTGC--CGAAGCTT---TCAAACAAAGGTCATG-CGGCCTCTGTTGTTATGGGGTATTAG 4345 Query 236 CGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCG 295 |||||||| |||| || | | |||| |||||||||| ||||| ||||| Sbjct 4346 ACGGCGTTTCCATCGCTTATCCCCCGGATACGGGCAAGTTGCTCACGCGTTACGCACCCT 4405 Query 296 TCCGCC 301 | |||| Sbjct 4406 TTCGCC 4411 >seq4681 Length=18840 Score = 132 bits (146), Expect = 1e-28 Identities = 196/273 (72%), Gaps = 11/273 (4%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93 ||||| || |||||||||||||||||||||| ||| |||||||||||| ||||||||| Sbjct 18840 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 18781 Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153 | | |||||||| | ||| ||||| | |||||||||| ||| | | ||||| | Sbjct 18780 GACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAA 18721 Query 154 CCTAATCGGCCGCGAGCCCATC--TTTCAGCGATAAATCTTTGGTCAAAGAA---TGATG 208 ||||| |||||||| ||| | || || || ||| ||||| || | ||| Sbjct 18720 GCTAATGTCTCGCGAGCCTATCCGTATCTGC--CGAAGCTT---TCAAACAAAGGTCATG 18666 Query 209 CCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAG 268 | |||||| ||||| |||||||| |||||||| |||| || | | | Sbjct 18665 -CGGCCTCTGTTGTTATGGGGTATTAGACGGCGTTTCCATCGCTTATCCCCCGGATACGG 18607 Query 269 GCAGGTTGCTCACGTGTTACTCACCCGTCCGCC 301 ||| |||||||||| ||||| ||||| | |||| Sbjct 18606 GCAAGTTGCTCACGCGTTACGCACCCTTTCGCC 18574 >seq4374 Length=59948 Score = 111 bits (122), Expect = 3e-22 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||||| || | ||||||| |||||| || |||||||||||||||||||||||| Sbjct 3830 GCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCT 3889 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| ||||| | | |||||||| | ||| | |||| || Sbjct 3890 GGACCGTGTCTCAGTTCCAGTGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGAAGG 3949 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | ||||||| ||| | | || | |||||| | ||| |||||| Sbjct 3950 CCAGGTGGGCCGTTACCCCGCCTGCAGCCTAATGGAACGCATCCCCATC 3998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998349091584