Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq2219 356 5e-96
seq3891 269 5e-70
seq2332 165 2e-38
seq4910 154 3e-35
seq4660 143 5e-32
seq4681 132 1e-28
seq4374 111 3e-22
>seq2219
Length=5028
Score = 356 bits (394), Expect = 5e-96
Identities = 254/292 (87%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 22 CCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 81
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 60
Query 82 CCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTA 141
||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |||
Sbjct 61 CCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTAGGCCGTTA 120
Query 142 TCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAG 201
| ||||||||| |||||| | |||||||||||| || |||||||||||||||||
Sbjct 121 CCCCACCAACTATCTAATCAGACGCGAGCCCATCCTTAAGCGATAAATCTTTGGTACGGT 180
Query 202 AATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACT 261
|||||||||| | |||||||||||||||| || |||||||| || ||| ||||
Sbjct 181 TATGATGCCATATCCGTACATTATGCGGTATTACTGTCCGTTTCCAGACACTATCCCACA 240
Query 262 CTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAAGCTATAT 313
|| || ||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 241 CTTAAGGGCAGGTTGCTCACGCGTTACTCACCCGTCCGCCACTCAGTCATAT 292
>seq3891
Length=32788
Score = 269 bits (298), Expect = 5e-70
Identities = 237/288 (82%), Gaps = 8/288 (3%)
Strand=Plus/Minus
Query 33 CAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 32788 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGC 32729
Query 93 CGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152
|| ||| |||||||| ||||||| |||||||| |||||||||| ||| ||||||||||
Sbjct 32728 CGGTCACCCTCTCAGGTCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACT 32669
Query 153 ACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATG--ATGCC 210
| |||||| | |||| | ||||||| | ||| ||| |||| ||| | ||| ||||
Sbjct 32668 AGCTAATCAGACGCGGGTCCATCTTATACCGA-AAAACTTT--TCACACTATGTCATGCG 32612
Query 211 ATCCTC-TGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGG 269
| | || || ||||||||||||||| |||||||||| |||||||| || | ||||
Sbjct 32611 A-CATCGTGCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTATTCCCCTGTATAAGG 32553
Query 270 CAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAAG-CTATATATC 316
||||| | |||| ||||||||||||||||||||| || | ||| |||
Sbjct 32552 TAGGTTACCCACGCGTTACTCACCCGTCCGCCACTCAGTCAATAAATC 32505
>seq2332
Length=45074
Score = 165 bits (182), Expect = 2e-38
Identities = 207/279 (74%), Gaps = 5/279 (2%)
Strand=Plus/Minus
Query 25 CCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 84
|||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 45074 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCC 45015
Query 85 AATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCT 144
||||||| | || |||||||| | ||| ||||| | ||||||||| ||| ||
Sbjct 45014 AATGTGGGGGGTCTTCCTCTCAGAACCCCTAGGCATCGTAGCTTTGGTGGGCCGTTACCT 44955
Query 145 CACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA--GCGATAAATCTTTGGTCAAAGA 202
|||||||| ||||| |||||||| ||| ||| || ||| | ||| | || |
Sbjct 44954 CACCAACTGGCTAATGCCACGCGAGCCAATCCGTCATCGCCGTAACT-TTTACACTAA-A 44897
Query 203 ATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTC 262
||| || | || | ||||| ||||||| |||||||||| ||| || |
Sbjct 44896 GCCATG-CAACTTCAGTGGTTATGGGGTATTACGCATCGTTTCCAATGACTATCCCCCAA 44838
Query 263 TGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCC 301
||| |||| |||||||||| ||||| ||||| ||||||
Sbjct 44837 TGACGGGCATGTTGCTCACGCGTTACGCACCCTTCCGCC 44799
>seq4910
Length=11294
Score = 154 bits (170), Expect = 3e-35
Identities = 222/311 (71%), Gaps = 9/311 (3%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||||||||| | ||| | |||| | ||||| | ||||| | ||||||||||||||||
Sbjct 1825 GGCGTCGCTCCGTCACGCTTTCGCGCATTGCGGAATATTCTTAGCTGCTGCCTCCCGTAG 1884
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||| |||||||||||||||| ||| ||| |||||||| |||| |||| |
Sbjct 1885 GAGTCTGGGCCGTATCTCAGTCCCAATGTGCCCGCTCACCCTCTCAGGCCGGATACCCGT 1944
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||||| | ||| | ||||| | || || |||||| ||| || | |
Sbjct 1945 CATCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTGATGGGCCGCAGGCCGCTCCTCCG 2004
Query 181 GCG-----ATAAATCTTTGGTCAAAGAATGATGCCATCCTCT--GACATTATGCGGTATT 233
||| ||| | || || | || | ||| | | | ||| |||| |||||||
Sbjct 2005 GCGGGGCAATAGCCCCTT--TCCTCGCATAACTCCAGCTTATGCGACCTTATCCGGTATT 2062
Query 234 AGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACC 293
| | | ||||||| | | ||| || || | || || | ||||||||||||||
Sbjct 2063 ACCCTGTGTTTCCACAGGCTATCCCCGTCCAGAGGGTGCGTCACCTACGTGTTACTCACC 2122
Query 294 CGTCCGCCACT 304
||||||| ||
Sbjct 2123 AGTCCGCCGCT 2133
>seq4660
Length=54038
Score = 143 bits (158), Expect = 5e-32
Identities = 218/306 (71%), Gaps = 11/306 (4%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||| || | |||||| |||||| || ||||||||||||||||||
Sbjct 4112 GGCATGGCTGGTTCAGCCTTCCGGCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 4171
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||| ||| |||||||||||| ||||||||| | | |||||||| | ||| ||
Sbjct 4172 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTAGACAT 4231
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC--TTT 178
||| | |||||||||| ||| | | ||||| | ||||| |||||||| ||| | |
Sbjct 4232 CGTAGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAATGTCTCGCGAGCCTATCCGTAT 4291
Query 179 CAGCGATAAATCTTTGGTCAAAGAA---TGATGCCATCCTCTGACATTATGCGGTATTAG 235
| || || ||| ||||| || | ||| | |||||| ||||| ||||||||
Sbjct 4292 CTGC--CGAAGCTT---TCAAACAAAGGTCATG-CGGCCTCTGTTGTTATGGGGTATTAG 4345
Query 236 CGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCG 295
|||||||| |||| || | | |||| |||||||||| ||||| |||||
Sbjct 4346 ACGGCGTTTCCATCGCTTATCCCCCGGATACGGGCAAGTTGCTCACGCGTTACGCACCCT 4405
Query 296 TCCGCC 301
| ||||
Sbjct 4406 TTCGCC 4411
>seq4681
Length=18840
Score = 132 bits (146), Expect = 1e-28
Identities = 196/273 (72%), Gaps = 11/273 (4%)
Strand=Plus/Minus
Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93
||||| || |||||||||||||||||||||| ||| |||||||||||| |||||||||
Sbjct 18840 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 18781
Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153
| | |||||||| | ||| ||||| | |||||||||| ||| | | ||||| |
Sbjct 18780 GACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAA 18721
Query 154 CCTAATCGGCCGCGAGCCCATC--TTTCAGCGATAAATCTTTGGTCAAAGAA---TGATG 208
||||| |||||||| ||| | || || || ||| ||||| || | |||
Sbjct 18720 GCTAATGTCTCGCGAGCCTATCCGTATCTGC--CGAAGCTT---TCAAACAAAGGTCATG 18666
Query 209 CCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAG 268
| |||||| ||||| |||||||| |||||||| |||| || | | |
Sbjct 18665 -CGGCCTCTGTTGTTATGGGGTATTAGACGGCGTTTCCATCGCTTATCCCCCGGATACGG 18607
Query 269 GCAGGTTGCTCACGTGTTACTCACCCGTCCGCC 301
||| |||||||||| ||||| ||||| | ||||
Sbjct 18606 GCAAGTTGCTCACGCGTTACGCACCCTTTCGCC 18574
>seq4374
Length=59948
Score = 111 bits (122), Expect = 3e-22
Identities = 126/169 (75%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||||| || | ||||||| |||||| || ||||||||||||||||||||||||
Sbjct 3830 GCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCT 3889
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
|| |||||||||||| ||| ||||| | | |||||||| | ||| | |||| ||
Sbjct 3890 GGACCGTGTCTCAGTTCCAGTGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGAAGG 3949
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
| ||||||| ||| | | || | |||||| | ||| ||||||
Sbjct 3950 CCAGGTGGGCCGTTACCCCGCCTGCAGCCTAATGGAACGCATCCCCATC 3998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998349091584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |