Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq4374 98.7 2e-18 seq4660 96.9 8e-18 seq4234 86.0 1e-14 seq2436 82.4 2e-13 >seq4374 Length=59948 Score = 98.7 bits (108), Expect = 2e-18 Identities = 275/408 (67%), Gaps = 23/408 (6%) Strand=Plus/Plus Query 7 CGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAA 66 |||| ||||| |||||||| |||||| |||| ||| || || | ||| |||| Sbjct 745 CGCCGTTCGGCTGGGCCTTAGGGACCGACTAACCCCGGGACGATTGACGTCGCCCGGGAA 804 Query 67 CCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTC 125 |||||| |||||| ||||||| | ||| | | || |||| |||||| ||| | Sbjct 805 ACCTTGGTCTTACGGCGGGGGGGATTCGCGCCCCCCTTATCGTTACTTATGCCTACAT-C 863 Query 126 TCACTCGCATCAA-CTCCACCA-----CACAGTCACCCGGCAGCTTCACCACTGACACGA 179 | | ||| | ||||| || ||||| ||| ||| |||| | | | || || Sbjct 864 TGCTTTTCATGACGCTCCAGCATGCCTCACAG-CAC---GCA--TTCAGCGCCGTCATGA 917 Query 180 C-GCTCCCCTACCCAAC-CACACAGGT--TGCCACAGCTTCGGCGGATAACTTAAGCCCC 235 ||||||||||| | || | | || | |||| ||||||||| | |||| ||| Sbjct 918 ATGCTCCCCTACCGATGACAAAAAAGTCATCCCACGGCTTCGGCGCGCAGCTTATACCCG 977 Query 236 GCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA-GGAT 294 || ||||| || || || ||| |||||||| ||||||||||||| || | || Sbjct 978 ATTA--TTATCCATGCCTGATTCCTCGACTAGTGAGCTGTTACGCACTCTTTGAATGAAT 1035 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC--ACTGA 352 |||||||||||||||||| | || | |||| | || || || || || ||| | Sbjct 1036 GGCTGCTTCCAAGCCAACATGCTAGCTGTCATAGGAAAGAGACTTCGTTAGCCTAACTCA 1095 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | | |||| |||||||||| | || ||||| | || ||||||| Sbjct 1096 GCTGCGACTTCGGGGCCTTAGACGGTGGTCTGGATTCTTCTCCTCTCG 1143 >seq4660 Length=54038 Score = 96.9 bits (106), Expect = 8e-18 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 211 AGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGA 270 |||||||||| |||| |||| | ||| ||| ||| | | || ||| ||||| Sbjct 1525 AGCTTCGGCGACAGTTTTAATGCCCGGT-CATCATCCACGCATCACCGCTCGACTAGTGA 1583 Query 271 GCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||| ||||||||||||| || || | ||||||||||||| ||| |||| | ||||| || Sbjct 1584 GCTGTTACGCACTCTTTGAATGAATAGCTGCTTCCAAGCTAACATCCTAGCTGTCTTGGC 1643 Query 330 AACTCCACATCCTTTC----CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| || |||| | ||| | | | ||| |||||||||||||| | ||||| Sbjct 1644 GGTGTCACTTCGTTTCGTCTCAACTTAAACTGCTCTTCGGGGCCTTAGCTGAAGGTCTGG 1703 Query 386 GCTGTTTCCCTCTCG 400 ||| || |||| ||| Sbjct 1704 GCTCTTACCCTTTCG 1718 >seq4234 Length=168850 Score = 86.0 bits (94), Expect = 1e-14 Identities = 210/308 (68%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 22 CCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCCTTGGATAATCGG 81 ||||||||||||||| |||| ||| || ||| | ||| |||| |||||| ||| Sbjct 86964 CCTTAGGACCCGACTGACCCCGGGACGATTAACGTCGCCCGGGAAACCTTGGTCTTGCGG 87023 Query 82 CGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTCTCACTCGCATCAACT 140 || ||| |||||||| | || |||| || ||| |||| | | || || Sbjct 87024 CGAGGGGGCATCCCACCCCCTTTAGCGTTACTTATACCTACATTTGCTTTTCCAGACGCT 87083 Query 141 CCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC-GCTCCCCTACCCAACCACA 199 ||| | |||| | | |||| | ||||| || ||||||||||| | | | Sbjct 87084 CCAG-AGTGGCTCACGCCACGCCTTCGACGCTGACTGGAATGCTCCCCTACCGATGCT-A 87141 Query 200 CAGGTTGCCACAGCTTCGGCGGATAA-CTTAAGCCCCGCTACATTATCGGCGCGGAATCA 258 | | |||| |||||||| ||| ||| | |||| | |||||| ||| | Sbjct 87142 TTGCATCCCACGGCTTCGGCA-ATATGCTTTATACCCGATT-ATTATCCACGCCCAGCTC 87199 Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCT 317 || ||| |||||||| ||||||||||||| || || ||||||||||||||||||| |||| Sbjct 87200 CTCGACTAGTGAGCTGTTACGCACTCTTTGAATGAATGGCTGCTTCCAAGCCAACATCCT 87259 Query 318 GGTTGTCT 325 | ||||| Sbjct 87260 AGCTGTCT 87267 >seq2436 Length=67316 Score = 82.4 bits (90), Expect = 2e-13 Identities = 204/301 (68%), Gaps = 9/301 (3%) Strand=Plus/Minus Query 106 CGCTACTCATGCCTGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTT 165 || |||| |||||| |||| || | || | ||||| ||| |||| ||| ||| Sbjct 1305 CGTTACTTATGCCTACATTTTCTTTTCCAGCCGCTCCAGCACGTC-TCACAACGCACCTT 1247 Query 166 CACCACTGACACGAC-GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATA 224 || ||||| || ||||||||||| | | | | | ||| ||||||||| Sbjct 1246 CAAGGCTGACTGGAATGCTCCCCTACCGATGCTTGC-GCATCCCATAGCTTCGGCAACGG 1188 Query 225 ACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTC 284 ||| | |||||| ||| ||| ||| | || ||| |||||||| |||||||||| Sbjct 1187 TCTTGATGCCCGCT-CATCATCCACGCAACTCCGCTCGACTAGTGAGCTGTTACGCACTC 1129 Query 285 TTTCAA-GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA---CTCCACATC 340 ||| || | || ||||||||||||| ||| |||| | |||| || | | || | | Sbjct 1128 TTTGAATGAATAGCTGCTTCCAAGCTAACATCCTAGCTGTCACTGCGATGTCACCTCGTT 1069 Query 341 CTTTC-CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 || || | ||| | | || |||||||| |||| || |||||||| || |||| || Sbjct 1068 CTGTCTCAACTTAAACCGTGTTTCGGGGCCTTGGCTGTTGGTCTGGGCTCTTACCCTTTC 1009 Query 400 G 400 | Sbjct 1008 G 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177539954176