Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq4374 98.7 2e-18
seq4660 96.9 8e-18
seq4234 86.0 1e-14
seq2436 82.4 2e-13
>seq4374
Length=59948
Score = 98.7 bits (108), Expect = 2e-18
Identities = 275/408 (67%), Gaps = 23/408 (6%)
Strand=Plus/Plus
Query 7 CGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAA 66
|||| ||||| |||||||| |||||| |||| ||| || || | ||| ||||
Sbjct 745 CGCCGTTCGGCTGGGCCTTAGGGACCGACTAACCCCGGGACGATTGACGTCGCCCGGGAA 804
Query 67 CCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTC 125
|||||| |||||| ||||||| | ||| | | || |||| |||||| ||| |
Sbjct 805 ACCTTGGTCTTACGGCGGGGGGGATTCGCGCCCCCCTTATCGTTACTTATGCCTACAT-C 863
Query 126 TCACTCGCATCAA-CTCCACCA-----CACAGTCACCCGGCAGCTTCACCACTGACACGA 179
| | ||| | ||||| || ||||| ||| ||| |||| | | | || ||
Sbjct 864 TGCTTTTCATGACGCTCCAGCATGCCTCACAG-CAC---GCA--TTCAGCGCCGTCATGA 917
Query 180 C-GCTCCCCTACCCAAC-CACACAGGT--TGCCACAGCTTCGGCGGATAACTTAAGCCCC 235
||||||||||| | || | | || | |||| ||||||||| | |||| |||
Sbjct 918 ATGCTCCCCTACCGATGACAAAAAAGTCATCCCACGGCTTCGGCGCGCAGCTTATACCCG 977
Query 236 GCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA-GGAT 294
|| ||||| || || || ||| |||||||| ||||||||||||| || | ||
Sbjct 978 ATTA--TTATCCATGCCTGATTCCTCGACTAGTGAGCTGTTACGCACTCTTTGAATGAAT 1035
Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC--ACTGA 352
|||||||||||||||||| | || | |||| | || || || || || ||| |
Sbjct 1036 GGCTGCTTCCAAGCCAACATGCTAGCTGTCATAGGAAAGAGACTTCGTTAGCCTAACTCA 1095
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| | |||| |||||||||| | || ||||| | || |||||||
Sbjct 1096 GCTGCGACTTCGGGGCCTTAGACGGTGGTCTGGATTCTTCTCCTCTCG 1143
>seq4660
Length=54038
Score = 96.9 bits (106), Expect = 8e-18
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 211 AGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGA 270
|||||||||| |||| |||| | ||| ||| ||| | | || ||| |||||
Sbjct 1525 AGCTTCGGCGACAGTTTTAATGCCCGGT-CATCATCCACGCATCACCGCTCGACTAGTGA 1583
Query 271 GCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329
||| ||||||||||||| || || | ||||||||||||| ||| |||| | ||||| ||
Sbjct 1584 GCTGTTACGCACTCTTTGAATGAATAGCTGCTTCCAAGCTAACATCCTAGCTGTCTTGGC 1643
Query 330 AACTCCACATCCTTTC----CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385
||| || |||| | ||| | | | ||| |||||||||||||| | |||||
Sbjct 1644 GGTGTCACTTCGTTTCGTCTCAACTTAAACTGCTCTTCGGGGCCTTAGCTGAAGGTCTGG 1703
Query 386 GCTGTTTCCCTCTCG 400
||| || |||| |||
Sbjct 1704 GCTCTTACCCTTTCG 1718
>seq4234
Length=168850
Score = 86.0 bits (94), Expect = 1e-14
Identities = 210/308 (68%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 22 CCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCCTTGGATAATCGG 81
||||||||||||||| |||| ||| || ||| | ||| |||| |||||| |||
Sbjct 86964 CCTTAGGACCCGACTGACCCCGGGACGATTAACGTCGCCCGGGAAACCTTGGTCTTGCGG 87023
Query 82 CGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTCTCACTCGCATCAACT 140
|| ||| |||||||| | || |||| || ||| |||| | | || ||
Sbjct 87024 CGAGGGGGCATCCCACCCCCTTTAGCGTTACTTATACCTACATTTGCTTTTCCAGACGCT 87083
Query 141 CCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC-GCTCCCCTACCCAACCACA 199
||| | |||| | | |||| | ||||| || ||||||||||| | | |
Sbjct 87084 CCAG-AGTGGCTCACGCCACGCCTTCGACGCTGACTGGAATGCTCCCCTACCGATGCT-A 87141
Query 200 CAGGTTGCCACAGCTTCGGCGGATAA-CTTAAGCCCCGCTACATTATCGGCGCGGAATCA 258
| | |||| |||||||| ||| ||| | |||| | |||||| ||| |
Sbjct 87142 TTGCATCCCACGGCTTCGGCA-ATATGCTTTATACCCGATT-ATTATCCACGCCCAGCTC 87199
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCT 317
|| ||| |||||||| ||||||||||||| || || ||||||||||||||||||| ||||
Sbjct 87200 CTCGACTAGTGAGCTGTTACGCACTCTTTGAATGAATGGCTGCTTCCAAGCCAACATCCT 87259
Query 318 GGTTGTCT 325
| |||||
Sbjct 87260 AGCTGTCT 87267
>seq2436
Length=67316
Score = 82.4 bits (90), Expect = 2e-13
Identities = 204/301 (68%), Gaps = 9/301 (3%)
Strand=Plus/Minus
Query 106 CGCTACTCATGCCTGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTT 165
|| |||| |||||| |||| || | || | ||||| ||| |||| ||| |||
Sbjct 1305 CGTTACTTATGCCTACATTTTCTTTTCCAGCCGCTCCAGCACGTC-TCACAACGCACCTT 1247
Query 166 CACCACTGACACGAC-GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATA 224
|| ||||| || ||||||||||| | | | | | ||| |||||||||
Sbjct 1246 CAAGGCTGACTGGAATGCTCCCCTACCGATGCTTGC-GCATCCCATAGCTTCGGCAACGG 1188
Query 225 ACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTC 284
||| | |||||| ||| ||| ||| | || ||| |||||||| ||||||||||
Sbjct 1187 TCTTGATGCCCGCT-CATCATCCACGCAACTCCGCTCGACTAGTGAGCTGTTACGCACTC 1129
Query 285 TTTCAA-GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA---CTCCACATC 340
||| || | || ||||||||||||| ||| |||| | |||| || | | || | |
Sbjct 1128 TTTGAATGAATAGCTGCTTCCAAGCTAACATCCTAGCTGTCACTGCGATGTCACCTCGTT 1069
Query 341 CTTTC-CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399
|| || | ||| | | || |||||||| |||| || |||||||| || |||| ||
Sbjct 1068 CTGTCTCAACTTAAACCGTGTTTCGGGGCCTTGGCTGTTGGTCTGGGCTCTTACCCTTTC 1009
Query 400 G 400
|
Sbjct 1008 G 1008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177539954176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |