Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq4374 208 1e-51 seq4910 181 2e-43 seq4660 179 6e-43 >seq4374 Length=59948 Score = 208 bits (230), Expect = 1e-51 Identities = 216/282 (77%), Gaps = 1/282 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||| ||| |||| || | |||||| || || || ||| | |||||||| | || || Sbjct 3456 CCCGCGCCTTCGAGCATGAGCGTCGGTAACACCCCGGCAGGCTGCCTTCGCAATCGGGGT 3515 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || || ||||||| ||||||||||||||||| || ||||| ||||||| |||| Sbjct 3516 TCATCGTGATATCTATGCATTTCACCGCTACACCACGAGTTCCGCCTGCCTCTTGTGCAC 3575 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||||| |||||||||| ||| | || ||||||| | |||||| |||||| Sbjct 3576 CCAAGAAAGACAGTTTCAACCGCATGACCCGG-TTGAGCCGGGACATTTCACGGCTGACT 3634 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || |||||||||| | | ||||||| |||||||||||||||||||||| | | | || Sbjct 3635 TGACTTCCCGCCTGCGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGACCTTCCG 3694 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| | ||||||| ||||||| Sbjct 3695 TATTACCGCGGCTGCTGGCACGGAATTAGCCGGTCCTTATTC 3736 >seq4910 Length=11294 Score = 181 bits (200), Expect = 2e-43 Identities = 210/282 (74%), Gaps = 1/282 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||| | | ||||| ||||||||||||| | | | | | ||||||||||| ||||| Sbjct 1451 CCCGCACCTTCGCACCTCAGCGTCAGTCATGCGCTCGGAGGCTGCCTTCGCCACCGGTGT 1510 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||| |||||||| |||||||| |||||| ||||||||| | | ||| || Sbjct 1511 TCTTCCTGATATCTACAGATTTCACCCCTACACCAGGAATTCCGCCTCCGCCTCGCTGAC 1570 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| || || | | |||||| |||| | |||||| | |||| Sbjct 1571 TCAAGACCAGCAGTATCGGGCGCCG-CGCGGGGTTGGGCCCCGCGATTTCACGCCCGACT 1629 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | || ||||||||| ||||||||| |||||||| |||| | |||||| || | |||| Sbjct 1630 TACCGGACCGCCTACATGCCCTTTACGCCCAATAATTCCGAACAACGCTCGCACCTTACG 1689 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 | |||||||||||||||||||||| ||||||| |||| ||| Sbjct 1690 TGTTACCGCGGCTGCTGGCACGTAATTAGCCGGTGCTTGTTC 1731 >seq4660 Length=54038 Score = 179 bits (198), Expect = 6e-43 Identities = 221/296 (75%), Gaps = 12/296 (4%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTG--TCCAGCAATCCGCCTTCGCCACTGGT 58 |||||||||||| |||||||||||| | || | || | || |||||||| | ||| Sbjct 3743 CCCACGCTTTCGTGCCTCAGCGTCAATGACGGATTCGTGAGAT--GCCTTCGCAATCGGT 3800 Query 59 GTTCCTCCGTA-TATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAG 117 |||| | ||| |||||| ||||||||||||||||| ||||| | || | || Sbjct 3801 GTTC-TGAGTAATATCTATGCATTTCACCGCTACACTACTCATTCC---TCCCACGGCAT 3856 Query 118 C---ACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACAT 174 | | || || |||| ||||| |||| || ||| || || |||||| | Sbjct 3857 CCGTATTCCAGCCTGCCAGTATCAAAGGCAGTTCCTGAGTTAGGCTCAGGTATTTCACCT 3916 Query 175 CTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 |||||||| | | |||||| | ||||||| |||||||||||||||||||||||||| Sbjct 3917 CTGACTTGACAGACAGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGCAT 3976 Query 235 CCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||||||||||||||||||||| ||||||||| |||||||| | | ||| Sbjct 3977 CCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCGTGATGTA 4032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828759060129