Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq15 306 6e-81 seq4234 304 2e-80 seq2436 291 1e-76 seq4660 242 6e-62 seq2047 105 1e-20 >seq15 Length=61086 Score = 306 bits (338), Expect = 6e-81 Identities = 219/252 (87%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 ||||||| ||||||||| |||||| ||||||| |||| |||||| | |||||| ||| Sbjct 60833 GGCTTCGCACTTAGATGCTTTCAGCGCTTATCCAATCCAGACTTAGATACCCAGCGGTGC 60892 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 || |||| | ||||||||| ||||||||| |||||||| |||||||||||||||| || Sbjct 60893 ACCTGGCGGCACAACTGGTAAACCAGAGGTCTGTCCATCACGGTCCTCTCGTACTAGTGA 60952 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 | || || | ||||| |||| ||||||||| ||||| |||||||||||||| ||||||| Sbjct 60953 CGGCACCACGCAAATCTCCTGCGCCCACGATAGATAGAGACCGAACTGTCTCACGACGTT 61012 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | Sbjct 61013 CTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCC 61072 Query 248 AGCCCCAGGATG 259 |||||||||||| Sbjct 61073 AGCCCCAGGATG 61084 >seq4234 Length=168850 Score = 304 bits (336), Expect = 2e-80 Identities = 228/268 (85%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 ||||||| |||||||||| |||||| ||||||| |||| || ||| | ||| || ||| Sbjct 85576 GGCTTCGTGCTTAGATGCTTTCAGCGCTTATCCGATCCAGACGTAGATACCCGGCGGTGC 85635 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | |||| | ||||| ||| ||||||||| |||||| | |||||||||||||||| | Sbjct 85636 TCCTGGCGGAACAACCGGTAAACCAGAGGTCTGTCCAACACGGTCCTCTCGTACTAGTGT 85695 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 ||| || | ||||| ||| ||||||||| ||||| |||||||||||||| ||||||| Sbjct 85696 CAGAGCCACGCAAATCTCCAGCGCCCACGATAGATAGAGACCGAACTGTCTCACGACGTT 85755 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | Sbjct 85756 CTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCC 85815 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| ||||||||||||||| Sbjct 85816 AGCCCCAGGATGTGACGAGCCGACATCG 85843 >seq2436 Length=67316 Score = 291 bits (322), Expect = 1e-76 Identities = 229/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 || || ||||||| |||||||||| |||||| ||||||| |||| | | | | ||| | Sbjct 2750 GAAGACGGCTTCGCGCTTAGATGCTTTCAGCGCTTATCCTGACCAAGCGTGGATACCCGG 2691 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| ||| |||||||| |||||| |||||||||||||||| Sbjct 2690 CGGTGCAGCTGGCGCCACAACCGGTATACCAGAGGCTTGTCCGACCCGGTCCTCTCGTAC 2631 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||||| ||| | || ||| ||||| |||||||| || ||||| |||||||||||||| | Sbjct 2630 TAAGGTCAGTCCTTCGCAATTTTCCAACGCCCACAACAGATAGAGACCGAACTGTCTCAC 2571 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| ||| Sbjct 2570 GACGTTCTGAACCCAGCTCGCGTGCCACTTTAATCGGCGAACAGCCGAACCCTTGGAACC 2511 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| ||||||||||||||| Sbjct 2510 TGCTCCAGCCCCAGGATGTGACGAGCCGACATCG 2477 >seq4660 Length=54038 Score = 242 bits (268), Expect = 6e-62 Identities = 199/242 (82%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 34 CTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAG 93 ||||||| || | | | | | ||| || |||| |||| ||||| ||| ||||| Sbjct 2 CTTATCCTGACCCAGCGTGGATACCCGGCGGTGCAGCTGGCGCCACAACCGGTATACCAG 61 Query 94 AGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCC 153 ||| | |||| ||||||||||||||||||||| ||| | || |||| |||| |||||| Sbjct 62 AGGCTGGTCCGACCCGGTCCTCTCGTACTAAGGTCAGACCTTCGCAAACTTCCAACGCCC 121 Query 154 ACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTA 213 || || ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 122 ACAACAGATAGAGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTA 181 Query 214 ATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACAT 273 || ||||||||||| ||||||||| |||| || ||||||||||| | ||||||||||||| Sbjct 182 ATCGGCGAACAGCCGAACCCTTGGAACCTGCTCCAGCCCCAGGACGTGACGAGCCGACAT 241 Query 274 CG 275 || Sbjct 242 CG 243 >seq2047 Length=4804 Score = 105 bits (116), Expect = 1e-20 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 ||||||| |||||||||| |||||| ||||||| ||| || | ||| ||| || ||| Sbjct 4656 GGCTTCGCGCTTAGATGCGTTCAGCGCTTATCCGATCCCGACGTGGCTACCCTGCGGTGC 4715 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 || |||| | ||||| || | ||||||||| ||| | |||||||||||||||| | Sbjct 4716 ACCTGGCGGCACAACAGGCGGACCAGAGGTCGGTCAGGCACGGTCCTCTCGTACTAGTGC 4775 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGA 157 | | || | ||||| | | |||||||||| Sbjct 4776 CCGAGCCGCGCAAATCT-CAACGCCCACGA 4804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780761431164