Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq4660 223 8e-56
seq3891 215 1e-53
seq2219 192 1e-46
seq4374 187 6e-45
seq2332 185 2e-44
seq4681 178 3e-42
seq4910 152 1e-34
seq3701 73.4 1e-10
>seq4660
Length=54038
Score = 223 bits (246), Expect = 8e-56
Identities = 304/419 (73%), Gaps = 19/419 (5%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||| |||| ||| |||| || | ||||||||||||||| |||| ||| || ||||
Sbjct 4080 TTTACGACCCATAGGGCCTTAATCCTGCACGCGGCATGGCTGGTTCAGCCTTCCGGCCAT 4139
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
|| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 4140 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 4199
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
||| | | |||||||||| | |||| ||||| |||| |||||||| ||||||||||
Sbjct 4200 TGGGGGACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCC 4259
Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243
||| ||||||| | | | ||||| || |||||| | | | |
Sbjct 4260 AACAAGCTAATGTCTCGCGAGCCTATCCGTATCTG------CCGAAGCTTTCAAACAAAG 4313
Query 244 GTCTTGCGAC-------GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCC 296
||| |||| | |||||| |||||||| | |||||||| | |||||||||
Sbjct 4314 GTCATGCGGCCTCTGTTGTTATGGGGTATTAGACGGCGTTTCCATCGCTTATCCCCCGGA 4373
Query 297 ATCAGGC-AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGC 355
| ||| |||| | || | |||| ||||| | |||| ||| | ||| | | ||
Sbjct 4374 TACGGGCAAGTTGCTCACGCGTTACGCACCCTTTCGCCGGTCGCCGGCG-GGTA--TTGC 4430
Query 356 TGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| | || | | || ||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 4431 TAC-CCCCGCTGCCCCTCGACTTGCATGTGTTAAGCCTGCCGCTAGCGTTCATCCTGAG 4488
>seq3891
Length=32788
Score = 215 bits (238), Expect = 1e-53
Identities = 270/368 (73%), Gaps = 28/368 (8%)
Strand=Plus/Minus
Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127
|||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||
Sbjct 32788 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGC 32729
Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187
||||| |||||||| | |||| ||||||||||| |||||||| ||||| | ||||||
Sbjct 32728 CGGTCACCCTCTCAGGTCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACT 32669
Query 188 AGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCT 247
|||||||| | |||| |||| ||| || | || | | | || | |||
Sbjct 32668 AGCTAATCAGACGCGGGTCCATCTTATACCGAAA------AACTTTTCACACTAT-GTCA 32616
Query 248 TGCGAC--------GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299
|||||| ||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 32615 TGCGACATCGTGCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTATTCCCCTGTATA 32556
Query 300 AGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTC-GTCAGCGAAGCAGCAAGC-- 355
||| | ||| |||| | ||||||||||||||||||||| |||| || | || |
Sbjct 32555 AGGTAGGTTACCCACGCGTTACTCACCCGTCCGCCACTCAGTCAATAAATCGTCACCCCG 32496
Query 356 --TGCTTCCTGTTA-------CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 406
| || | || |||||||||||||||||||| || |||||||||||||
Sbjct 32495 AAAGGATCGTAATAAATTGCTTCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTC 32436
Query 407 AATCTGAG 414
| |||||
Sbjct 32435 ATCCTGAG 32428
>seq2219
Length=5028
Score = 192 bits (212), Expect = 1e-46
Identities = 272/375 (73%), Gaps = 23/375 (6%)
Strand=Plus/Plus
Query 59 CCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 118
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 3 CCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 62
Query 119 CAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACC 178
|| |||||| | ||| |||||||| || |||| |||||||| || ||| |||| |||||
Sbjct 63 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTAGGCCGTTACC 122
Query 179 CCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCT 238
|| ||||||| |||||| | | | ||||| || || | | ||| | |
Sbjct 123 CCACCAACTATCTAATCAGACGCGAGCCCATCCTTAAGCGATA-AATCTTTGGTACGGTT 181
Query 239 CTTTGGTC--TTGCG-ACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTC 295
| | | | || || ||||||||||||| |||||||||| |||||| | |
Sbjct 182 ATGATGCCATATCCGTACATTATGCGGTATTACTGTCCGTTTCCAGACACTATCCCACAC 241
Query 296 CATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTC-GTCAGCGAAGCAGCAA 353
|||| ||| | || | ||||||||||||||||||||| |||| | || |||
Sbjct 242 TTAAGGGCAGGTTGCTCACGCGTTACTCACCCGTCCGCCACTCAGTCA---TATCATCAA 298
Query 354 GC-TGC-------TTCCTGTTAC------CGTTCGACTTGCATGTGTTAGGCCTGCCGCC 399
| | | ||| || | | ||||||||||||||||||||||| ||||||
Sbjct 299 TCATTCCGAAGAATTCATGATTCAAGCTTCGTTCGACTTGCATGTGTTAGGCACGCCGCC 358
Query 400 AGCGTTCAATCTGAG 414
||||||| |||||
Sbjct 359 AGCGTTCGTCCTGAG 373
>seq4374
Length=59948
Score = 187 bits (206), Expect = 6e-45
Identities = 150/180 (83%), Gaps = 1/180 (1%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||| ||| ||||| || ||||| | |||||| ||||||||||||||||
Sbjct 3792 TTTACAACCCGTAGGGCCTTCATCCCGCACGCTACTTGGCTGGTTCAGGCTTGCGCCCAT 3851
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3852 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 3911
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
||| | | |||||||||| | ||| |||| | | ||||||||| ||||||||||
Sbjct 3912 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGAAGGCCAGGTGGGCCGTTACCCCGCC 3971
Score = 75.2 bits (82), Expect = 3e-11
Identities = 78/100 (78%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 317 TTACTCACCCGTCCGCCACTCGTCAGCGAA-GCAGCAAGCTGCT-TCCTGTTACCGTTCG 374
|||||||||| |||||| ||| || | || | |||||||| || | || | || |||
Sbjct 4106 TTACTCACCCATCCGCCGGTCGCCATCAAAAGTAGCAAGCTACTCTTATGCTGCCCCTCG 4165
Query 375 ACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||||||| ||||| || |||||||| |||||
Sbjct 4166 ACTTGCATGTGTTAAGCCTGTAGCTAGCGTTCATCCTGAG 4205
>seq2332
Length=45074
Score = 185 bits (204), Expect = 2e-44
Identities = 261/363 (72%), Gaps = 18/363 (5%)
Strand=Plus/Minus
Query 60 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119
|||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 45074 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCC 45015
Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179
| ||||| |||| |||||||||| | ||||| ||||| || | |||||||| |||||
Sbjct 45014 AATGTGGGGGGTCTTCCTCTCAGAACCCCTAGGCATCGTAGCTTTGGTGGGCCGTTACCT 44955
Query 180 CGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTC 239
| |||||| |||||| ||| | | ||||| | | ||| | | | |
Sbjct 44954 CACCAACTGGCTAATGCCACGCGAGCCAATCCGTCATCG------CCGTAACTTTTACAC 44901
Query 240 TTTGGTCTTGCGAC-------GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292
| | | ||| || |||||| ||||||| || |||||||| || |||||||
Sbjct 44900 TAAAGCCATGCAACTTCAGTGGTTATGGGGTATTACGCATCGTTTCCAATGACTATCCCC 44841
Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351
| | |||| ||| | || | |||| ||||| |||||| ||| | || ||| |
Sbjct 44840 CAATGACGGGCATGTTGCTCACGCGTTACGCACCCTTCCGCCGGTCGCCGGC-AAGTA-- 44784
Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411
||| | ||| | | || ||||||||||||||||| ||||||||| |||||||| ||
Sbjct 44783 TTGCTAC-TCCCGCTGCCCCTCGACTTGCATGTGTTAAGCCTGCCGCTAGCGTTCATCCT 44725
Query 412 GAG 414
|||
Sbjct 44724 GAG 44722
>seq4681
Length=18840
Score = 178 bits (196), Expect = 3e-42
Identities = 254/354 (72%), Gaps = 18/354 (5%)
Strand=Plus/Minus
Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128
|||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 18840 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 18781
Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188
| | |||||||||| | |||| ||||| |||| |||||||| ||||||||||||| |
Sbjct 18780 GACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAA 18721
Query 189 GCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTT 248
|||||| | | | ||||| || |||||| | | | |||| |
Sbjct 18720 GCTAATGTCTCGCGAGCCTATCCGTATCTG------CCGAAGCTTTCAAACAAAGGTCAT 18667
Query 249 GCGAC-------GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG 301
||| | |||||| |||||||| | |||||||| | ||||||||| | |
Sbjct 18666 GCGGCCTCTGTTGTTATGGGGTATTAGACGGCGTTTCCATCGCTTATCCCCCGGATACGG 18607
Query 302 GC-AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTT 360
|| |||| | || | |||| ||||| | |||| ||| | ||| | | ||| |
Sbjct 18606 GCAAGTTGCTCACGCGTTACGCACCCTTTCGCCGGTCGCCGGCG-GGTA--TTGCTAC-C 18551
Query 361 CCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| | | || ||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 18550 CCCGCTGCCCCTCGACTTGCATGTGTTAAGCCTGCCGCTAGCGTTCATCCTGAG 18497
>seq4910
Length=11294
Score = 152 bits (168), Expect = 1e-34
Identities = 283/407 (70%), Gaps = 20/407 (5%)
Strand=Plus/Plus
Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77
||||||| || | |||||||| | ||| | ||| |||| ||| ||||| | |||||||
Sbjct 1807 GGCCTTCATCGTCCACGCGGCGTCGCTCCGTCACGCTTTCGCGCATTGCGGAATATTCTT 1866
Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137
|||||||||||||||||||||||| |||| ||||||| ||| |||| | | ||| |||
Sbjct 1867 AGCTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGCCCGCTCACCCT 1926
Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT-CC 196
||||| || | || || |||||| ||||| || |||| |||||||| |||| ||
Sbjct 1927 CTCAGGCCGGATACCCGTCATCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTGATGGG 1986
Query 197 CATCTGG--GTTCATCCGATAGTG--AGAGGCCCGAAGGTCCC---CCTCTTTGGTCTTG 249
| | || | || |||| | | | || ||| || | ||| | | ||
Sbjct 1987 CCGCAGGCCGCTCCTCCGGCGGGGCAATAGCCCCTTTCCTCGCATAACTC-CAGCTTATG 2045
Query 250 CGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTC 309
|||| |||| |||||||| || ||||||| || ||||||| |||| ||| | ||
Sbjct 2046 CGACCTTATCCGGTATTACCCTGTGTTTCCACAGGCTATCCCCGTCCA-GAGGGTGCGTC 2104
Query 310 CCAGAC--ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTA 367
| || ||||||||| ||||||| ||| || | | | | | ||| ||
Sbjct 2105 ACCTACGTGTTACTCACCAGTCCGCCGCTC--TAGGCACCCCGGAGGGTGC------TTG 2156
Query 368 CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||| ||||||||||| | || | ||||||||||||| ||||||
Sbjct 2157 CCGCCCGACTTGCATGCTTAAGACGCGCCGCCAGCGTTCGTTCTGAG 2203
>seq3701
Length=150198
Score = 73.4 bits (80), Expect = 1e-10
Identities = 46/50 (92%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 120 TTACCGTTCGACTTGCATGTATTAGGCCTGCCGCTAGCGTTCATCCTGAG 169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222337669824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |