Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq4660 223 8e-56 seq3891 215 1e-53 seq2219 192 1e-46 seq4374 187 6e-45 seq2332 185 2e-44 seq4681 178 3e-42 seq4910 152 1e-34 seq3701 73.4 1e-10 >seq4660 Length=54038 Score = 223 bits (246), Expect = 8e-56 Identities = 304/419 (73%), Gaps = 19/419 (5%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||| |||| ||| |||| || | ||||||||||||||| |||| ||| || |||| Sbjct 4080 TTTACGACCCATAGGGCCTTAATCCTGCACGCGGCATGGCTGGTTCAGCCTTCCGGCCAT 4139 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| |||||||||||||||||||||| |||||||||||||||||||| || Sbjct 4140 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 4199 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | | |||||||||| | |||| ||||| |||| |||||||| |||||||||| Sbjct 4200 TGGGGGACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCC 4259 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||| ||||||| | | | ||||| || |||||| | | | | Sbjct 4260 AACAAGCTAATGTCTCGCGAGCCTATCCGTATCTG------CCGAAGCTTTCAAACAAAG 4313 Query 244 GTCTTGCGAC-------GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCC 296 ||| |||| | |||||| |||||||| | |||||||| | ||||||||| Sbjct 4314 GTCATGCGGCCTCTGTTGTTATGGGGTATTAGACGGCGTTTCCATCGCTTATCCCCCGGA 4373 Query 297 ATCAGGC-AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGC 355 | ||| |||| | || | |||| ||||| | |||| ||| | ||| | | || Sbjct 4374 TACGGGCAAGTTGCTCACGCGTTACGCACCCTTTCGCCGGTCGCCGGCG-GGTA--TTGC 4430 Query 356 TGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | || | | || ||||||||||||||||| ||||||||| |||||||| ||||| Sbjct 4431 TAC-CCCCGCTGCCCCTCGACTTGCATGTGTTAAGCCTGCCGCTAGCGTTCATCCTGAG 4488 >seq3891 Length=32788 Score = 215 bits (238), Expect = 1e-53 Identities = 270/368 (73%), Gaps = 28/368 (8%) Strand=Plus/Minus Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||| Sbjct 32788 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGC 32729 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 ||||| |||||||| | |||| ||||||||||| |||||||| ||||| | |||||| Sbjct 32728 CGGTCACCCTCTCAGGTCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACT 32669 Query 188 AGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCT 247 |||||||| | |||| |||| ||| || | || | | | || | ||| Sbjct 32668 AGCTAATCAGACGCGGGTCCATCTTATACCGAAA------AACTTTTCACACTAT-GTCA 32616 Query 248 TGCGAC--------GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 |||||| ||||||||||||||| |||||||| ||||| ||||| || Sbjct 32615 TGCGACATCGTGCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTATTCCCCTGTATA 32556 Query 300 AGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTC-GTCAGCGAAGCAGCAAGC-- 355 ||| | ||| |||| | ||||||||||||||||||||| |||| || | || | Sbjct 32555 AGGTAGGTTACCCACGCGTTACTCACCCGTCCGCCACTCAGTCAATAAATCGTCACCCCG 32496 Query 356 --TGCTTCCTGTTA-------CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 406 | || | || |||||||||||||||||||| || ||||||||||||| Sbjct 32495 AAAGGATCGTAATAAATTGCTTCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTC 32436 Query 407 AATCTGAG 414 | ||||| Sbjct 32435 ATCCTGAG 32428 >seq2219 Length=5028 Score = 192 bits (212), Expect = 1e-46 Identities = 272/375 (73%), Gaps = 23/375 (6%) Strand=Plus/Plus Query 59 CCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 118 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 3 CCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 62 Query 119 CAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACC 178 || |||||| | ||| |||||||| || |||| |||||||| || ||| |||| ||||| Sbjct 63 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTAGGCCGTTACC 122 Query 179 CCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCT 238 || ||||||| |||||| | | | ||||| || || | | ||| | | Sbjct 123 CCACCAACTATCTAATCAGACGCGAGCCCATCCTTAAGCGATA-AATCTTTGGTACGGTT 181 Query 239 CTTTGGTC--TTGCG-ACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTC 295 | | | | || || ||||||||||||| |||||||||| |||||| | | Sbjct 182 ATGATGCCATATCCGTACATTATGCGGTATTACTGTCCGTTTCCAGACACTATCCCACAC 241 Query 296 CATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTC-GTCAGCGAAGCAGCAA 353 |||| ||| | || | ||||||||||||||||||||| |||| | || ||| Sbjct 242 TTAAGGGCAGGTTGCTCACGCGTTACTCACCCGTCCGCCACTCAGTCA---TATCATCAA 298 Query 354 GC-TGC-------TTCCTGTTAC------CGTTCGACTTGCATGTGTTAGGCCTGCCGCC 399 | | | ||| || | | ||||||||||||||||||||||| |||||| Sbjct 299 TCATTCCGAAGAATTCATGATTCAAGCTTCGTTCGACTTGCATGTGTTAGGCACGCCGCC 358 Query 400 AGCGTTCAATCTGAG 414 ||||||| ||||| Sbjct 359 AGCGTTCGTCCTGAG 373 >seq4374 Length=59948 Score = 187 bits (206), Expect = 6e-45 Identities = 150/180 (83%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||| ||||| || ||||| | |||||| |||||||||||||||| Sbjct 3792 TTTACAACCCGTAGGGCCTTCATCCCGCACGCTACTTGGCTGGTTCAGGCTTGCGCCCAT 3851 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3852 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 3911 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | | |||||||||| | ||| |||| | | ||||||||| |||||||||| Sbjct 3912 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGAAGGCCAGGTGGGCCGTTACCCCGCC 3971 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/100 (78%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 317 TTACTCACCCGTCCGCCACTCGTCAGCGAA-GCAGCAAGCTGCT-TCCTGTTACCGTTCG 374 |||||||||| |||||| ||| || | || | |||||||| || | || | || ||| Sbjct 4106 TTACTCACCCATCCGCCGGTCGCCATCAAAAGTAGCAAGCTACTCTTATGCTGCCCCTCG 4165 Query 375 ACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||| ||||| || |||||||| ||||| Sbjct 4166 ACTTGCATGTGTTAAGCCTGTAGCTAGCGTTCATCCTGAG 4205 >seq2332 Length=45074 Score = 185 bits (204), Expect = 2e-44 Identities = 261/363 (72%), Gaps = 18/363 (5%) Strand=Plus/Minus Query 60 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119 |||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct 45074 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCC 45015 Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179 | ||||| |||| |||||||||| | ||||| ||||| || | |||||||| ||||| Sbjct 45014 AATGTGGGGGGTCTTCCTCTCAGAACCCCTAGGCATCGTAGCTTTGGTGGGCCGTTACCT 44955 Query 180 CGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTC 239 | |||||| |||||| ||| | | ||||| | | ||| | | | | Sbjct 44954 CACCAACTGGCTAATGCCACGCGAGCCAATCCGTCATCG------CCGTAACTTTTACAC 44901 Query 240 TTTGGTCTTGCGAC-------GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292 | | | ||| || |||||| ||||||| || |||||||| || ||||||| Sbjct 44900 TAAAGCCATGCAACTTCAGTGGTTATGGGGTATTACGCATCGTTTCCAATGACTATCCCC 44841 Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351 | | |||| ||| | || | |||| ||||| |||||| ||| | || ||| | Sbjct 44840 CAATGACGGGCATGTTGCTCACGCGTTACGCACCCTTCCGCCGGTCGCCGGC-AAGTA-- 44784 Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 ||| | ||| | | || ||||||||||||||||| ||||||||| |||||||| || Sbjct 44783 TTGCTAC-TCCCGCTGCCCCTCGACTTGCATGTGTTAAGCCTGCCGCTAGCGTTCATCCT 44725 Query 412 GAG 414 ||| Sbjct 44724 GAG 44722 >seq4681 Length=18840 Score = 178 bits (196), Expect = 3e-42 Identities = 254/354 (72%), Gaps = 18/354 (5%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 |||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 18840 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 18781 Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 | | |||||||||| | |||| ||||| |||| |||||||| ||||||||||||| | Sbjct 18780 GACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAA 18721 Query 189 GCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTT 248 |||||| | | | ||||| || |||||| | | | |||| | Sbjct 18720 GCTAATGTCTCGCGAGCCTATCCGTATCTG------CCGAAGCTTTCAAACAAAGGTCAT 18667 Query 249 GCGAC-------GTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG 301 ||| | |||||| |||||||| | |||||||| | ||||||||| | | Sbjct 18666 GCGGCCTCTGTTGTTATGGGGTATTAGACGGCGTTTCCATCGCTTATCCCCCGGATACGG 18607 Query 302 GC-AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTT 360 || |||| | || | |||| ||||| | |||| ||| | ||| | | ||| | Sbjct 18606 GCAAGTTGCTCACGCGTTACGCACCCTTTCGCCGGTCGCCGGCG-GGTA--TTGCTAC-C 18551 Query 361 CCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | | || ||||||||||||||||| ||||||||| |||||||| ||||| Sbjct 18550 CCCGCTGCCCCTCGACTTGCATGTGTTAAGCCTGCCGCTAGCGTTCATCCTGAG 18497 >seq4910 Length=11294 Score = 152 bits (168), Expect = 1e-34 Identities = 283/407 (70%), Gaps = 20/407 (5%) Strand=Plus/Plus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 ||||||| || | |||||||| | ||| | ||| |||| ||| ||||| | ||||||| Sbjct 1807 GGCCTTCATCGTCCACGCGGCGTCGCTCCGTCACGCTTTCGCGCATTGCGGAATATTCTT 1866 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 |||||||||||||||||||||||| |||| ||||||| ||| |||| | | ||| ||| Sbjct 1867 AGCTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGCCCGCTCACCCT 1926 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT-CC 196 ||||| || | || || |||||| ||||| || |||| |||||||| |||| || Sbjct 1927 CTCAGGCCGGATACCCGTCATCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTGATGGG 1986 Query 197 CATCTGG--GTTCATCCGATAGTG--AGAGGCCCGAAGGTCCC---CCTCTTTGGTCTTG 249 | | || | || |||| | | | || ||| || | ||| | | || Sbjct 1987 CCGCAGGCCGCTCCTCCGGCGGGGCAATAGCCCCTTTCCTCGCATAACTC-CAGCTTATG 2045 Query 250 CGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTC 309 |||| |||| |||||||| || ||||||| || ||||||| |||| ||| | || Sbjct 2046 CGACCTTATCCGGTATTACCCTGTGTTTCCACAGGCTATCCCCGTCCA-GAGGGTGCGTC 2104 Query 310 CCAGAC--ATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTA 367 | || ||||||||| ||||||| ||| || | | | | | ||| || Sbjct 2105 ACCTACGTGTTACTCACCAGTCCGCCGCTC--TAGGCACCCCGGAGGGTGC------TTG 2156 Query 368 CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||| | || | ||||||||||||| |||||| Sbjct 2157 CCGCCCGACTTGCATGCTTAAGACGCGCCGCCAGCGTTCGTTCTGAG 2203 >seq3701 Length=150198 Score = 73.4 bits (80), Expect = 1e-10 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||| ||||||||||||| |||||||| ||||| Sbjct 120 TTACCGTTCGACTTGCATGTATTAGGCCTGCCGCTAGCGTTCATCCTGAG 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222337669824