Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq3891 273 7e-71
seq4660 251 2e-64
seq2219 248 3e-63
seq4910 197 4e-48
seq4374 170 6e-40
seq2332 159 1e-36
seq4681 152 2e-34
>seq3891
Length=32788
Score = 273 bits (302), Expect = 7e-71
Identities = 225/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81
||| ||||||||||||||||||||||||||||||| || | |||| | ||||||
Sbjct 32517 GAGTGGCGGACGGGTGAGTAACGCGTGGGTAACCTACCTTATACAGGGGAATAACAGTTG 32576
Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCC 141
|||| | ||||||||| |||| | ||||||| | | || | ||| |
Sbjct 32577 GAAACGACTGCTAATACCGCATAAGCGCACGATGTCGCATGACATA-GTGTGAAAAGTTT 32635
Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201
||||| | ||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 32636 TTCGGTATAAGATGGACCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCCCACCAAGG 32695
Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 32696 CGACGATCAGTAGCCGACCTGAGAGGGTGACCGGCCACATTGGGACTGAGACACGGCCCA 32755
Query 262 AACTCCTACGGGAGGCAGCAGTGGGGAATATTG 294
|||||||||||||||||||||||||||||||||
Sbjct 32756 AACTCCTACGGGAGGCAGCAGTGGGGAATATTG 32788
>seq4660
Length=54038
Score = 251 bits (278), Expect = 2e-64
Identities = 362/501 (72%), Gaps = 26/501 (5%)
Strand=Plus/Minus
Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGG-ATAACATAC 80
|| ||||| | ||||| |||||||||| | ||| ||||| ||| | || |||| |
Sbjct 4415 GACCGGCGAAAGGGTGCGTAACGCGTGAGCAACTTGCCC-GTATCCGGGGGATAAGCGAT 4357
Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140
|||| | ||||||| |||| | || |||||| || | ||||||
Sbjct 4356 GGAAACGCCGTCTAATACCCCATAACA-ACAGAGGCCGCATGACCTTTGTTTGAAAGCTT 4298
Query 141 CGGCGG-TACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199
|||| | ||| |||||| | |||| ||||||| ||||| ||||||||| |||||
Sbjct 4297 CGGCAGATAC-GGATAGGCTCGCGAGACATTAGCTTGTTGGCGGGGTAACGGCCCACCAA 4239
Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259
||| ||||| ||| | |||||||| | || ||||||||||||||||||||||||
Sbjct 4238 GGCTACGATGTCTAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTC 4179
Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAG 319
||||||||||||||||||||||||| ||||||||| |||||| | ||| |||| |||
Sbjct 4178 CAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGGAAGGCTGAACCAG 4119
Query 320 CAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGTAAA--GC-TCTGTCCTCAAGGAAG 375
| | |||||||| ||| |||| ||| |||||||||| || | ||| | || ||
Sbjct 4118 CCATGCCGCGTGCAGGATTAAGGCCCTATGGGTCGTAAACTGCTTTTGTGGTGGAGCAAT 4059
Query 376 A-----TA-----------ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419
| || |||| |||| | | || |||| ||||||||| ||||||
Sbjct 4058 AAGACGTACGCGTACGTCGATGAGAGTACATCACGAATAAGCATCGGCTAACTCCGTGCC 3999
Query 420 AGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479
|||||||||||||||||| ||| || ||||||||||||| ||| | ||| ||||||||
Sbjct 3998 AGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGT 3940
Query 480 GCGTAGGTGGTTTCTTAAGTC 500
||||||| || | | |||||
Sbjct 3939 GCGTAGGCTGTCTGTCAAGTC 3919
>seq2219
Length=5028
Score = 248 bits (274), Expect = 3e-63
Identities = 224/282 (79%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81
||| ||||||||||||||||||||||| | |||||||||| | ||||| |
Sbjct 284 GAGTGGCGGACGGGTGAGTAACGCGTGAGCAACCTGCCCTTAAGTGTGGGATAGTGTCTG 225
Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCC 141
|||| | | |||||| ||||| ||| ||| |||| || ||| ||||| |
Sbjct 224 GAAACGGACAGTAATACCGCATAATGTACGGATATGGCATCATAACCGTACCAAAGATTT 165
Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201
|| | ||||| | | ||||||||||||| |||||||| ||||||||| |||||||
Sbjct 164 ATCGCTTAAGGATGGGCTCGCGTCTGATTAGATAGTTGGTGGGGTAACGGCCTACCAAGT 105
Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261
|||||||||||||||| |||||||| ||| |||||||||||| |||||||||||| |||
Sbjct 104 CGACGATCAGTAGCCGGACTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCA 45
Query 262 AACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 303
|||||||||||||||||||||||||||||||||||||||||
Sbjct 44 GACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 3
>seq4910
Length=11294
Score = 197 bits (218), Expect = 4e-48
Identities = 267/369 (72%), Gaps = 31/369 (8%)
Strand=Plus/Minus
Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209
|||| | || ||| | || |||| ||||| ||||||| |||||||||| ||
Sbjct 2001 AGGAGCGGCCTGCGGCCCATCAGCTGGTTGGCGGTGTAACGGACCACCAAGGCGATGACG 1942
Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269
||| ||| ||||||||||||| ||| |||||||| ||||||| |||| ||| |||||||
Sbjct 1941 GGTATCCGGCCTGAGAGGGTGAGCGGGCACATTGGGACTGAGATACGGCCCAGACTCCTA 1882
Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329
||||||||||||| ||||||| | ||||| || ||||| ||| | ||| ||||||||
Sbjct 1881 CGGGAGGCAGCAGCTAAGAATATTCCGCAATGCGCGAAAGCGTGACGGAGCGACGCCGCG 1822
Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAG--CTCTGTC-CTCAAGGAAGATAATGACGGT 386
|| ||||||||||| ||| | | || || || | | |||| |||| || ||
Sbjct 1821 TGGACGATGAAGGCCGGAAGGTTGCAGAGTCCTTTGGCGACCGAGGA--ATAAGGAGGGG 1764
Query 387 A-----------CT----TGA--GGAGG--------AAGCCCCGGCTAACTACGTGCCAG 421
| || ||| | ||| |||| |||||||| ||||||||||
Sbjct 1763 AGCGGAAAGCCCCTTTGGTGACTGTAGGTCGAGAACAAGCACCGGCTAATTACGTGCCAG 1704
Query 422 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGC 481
|||||||||||| ||||| || || |||||| | |||||||| | ||||||||||||
Sbjct 1703 CAGCCGCGGTAACACGTAAGGTGCGAGCGTTGTTCGGAATTA-TTGGGCGTAAAGGGCAT 1645
Query 482 GTAGGTGGT 490
||||| |||
Sbjct 1644 GTAGGCGGT 1636
>seq4374
Length=59948
Score = 170 bits (188), Expect = 6e-40
Identities = 237/326 (73%), Gaps = 21/326 (6%)
Strand=Plus/Minus
Query 184 GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTG 243
||||||||| ||| | | |||| ||| | |||||||| | || ||||| ||
Sbjct 3966 GGTAACGGCCCACCTGGCCTTCGATGGATAGGGGTTCTGAGAGGAAGGTCCCCCACACTG 3907
Query 244 GAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 303
|||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct 3906 GAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGG 3847
Query 304 CAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGTAAAGCTC- 361
| |||||||| |||| | | ||||| | |||||||| ||| ||||| ||||| | |
Sbjct 3846 CGCAAGCCTGAACCAGCCAAGTAGCGTGCGGGATGAAGGCCCTACGGGTTGTAAACCGCT 3787
Query 362 TGTCCTCAAGG---AAGATAATGACG-GT----ACTTG-AG---------GAGGAAGCCC 403
| | | | || ||| |||| || |||| || || ||| |
Sbjct 3786 TTTGCGCGGGGATAAAGCGGGGGACGCGTCCCCCCTTGCAGGTACCGCGCGAATAAGGAC 3727
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||| | |||||||||||||||||||||||| | || | |||||||||||| |||
Sbjct 3726 CGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGAAGGTCCGGGCGTTATCCGGATTTA 3667
Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGG 489
| ||| ||||||| ||| ||| ||
Sbjct 3666 -TTGGGTTTAAAGGGAGCGCAGGCGG 3642
>seq2332
Length=45074
Score = 159 bits (176), Expect = 1e-36
Identities = 209/283 (74%), Gaps = 5/283 (2%)
Strand=Plus/Plus
Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAA-CATAC 80
|| ||||||| ||||| |||||||||| | ||| ||||| | ||||| |||
Sbjct 44795 GACCGGCGGAAGGGTGCGTAACGCGTGAGCAACATGCCCGTCATTGGGGGATAGTCATTG 44854
Query 81 CGAAAGGTATGC-TAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCT 139
|||| | |||| |||||| |||| ||| | |||||| ||| | |||| |
Sbjct 44855 -GAAACG-ATGCGTAATACCCCATAACC-ACTGAAGTTGCATGGCTTTAGTGTAAAAGTT 44911
Query 140 CCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199
||||| | |||| | | ||||| |||||| ||||||| |||||||||| |||||
Sbjct 44912 ACGGCGATGACGGATTGGCTCGCGTGGCATTAGCCAGTTGGTGAGGTAACGGCCCACCAA 44971
Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259
|| ||||| ||| | |||||||| || | ||||||||| |||||||||||| |
Sbjct 44972 AGCTACGATGCCTAGGGGTTCTGAGAGGAAGACCCCCCACATTGGGACTGAGACACGGCC 45031
Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGG 302
||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 45032 CAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGG 45074
>seq4681
Length=18840
Score = 152 bits (168), Expect = 2e-34
Identities = 202/274 (74%), Gaps = 5/274 (2%)
Strand=Plus/Plus
Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGG-ATAACATAC 80
|| ||||| | ||||| |||||||||| | ||| ||||| ||| | || |||| |
Sbjct 18570 GACCGGCGAAAGGGTGCGTAACGCGTGAGCAACTTGCCC-GTATCCGGGGGATAAGCGAT 18628
Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140
|||| | ||||||| |||| | || |||||| || | ||||||
Sbjct 18629 GGAAACGCCGTCTAATACCCCATAACA-ACAGAGGCCGCATGACCTTTGTTTGAAAGCTT 18687
Query 141 CGGCGG-TACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199
|||| | ||| |||||| | |||| ||||||| ||||| ||||||||| |||||
Sbjct 18688 CGGCAGATAC-GGATAGGCTCGCGAGACATTAGCTTGTTGGCGGGGTAACGGCCCACCAA 18746
Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259
||| ||||| ||| | |||||||| | || ||||||||||||||||||||||||
Sbjct 18747 GGCTACGATGTCTAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTC 18806
Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293
||||||||||||||||||||||||| ||||||||
Sbjct 18807 CAAACTCCTACGGGAGGCAGCAGTGAGGAATATT 18840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497523637376
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