Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3891 273 7e-71 seq4660 251 2e-64 seq2219 248 3e-63 seq4910 197 4e-48 seq4374 170 6e-40 seq2332 159 1e-36 seq4681 152 2e-34 >seq3891 Length=32788 Score = 273 bits (302), Expect = 7e-71 Identities = 225/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 ||| ||||||||||||||||||||||||||||||| || | |||| | |||||| Sbjct 32517 GAGTGGCGGACGGGTGAGTAACGCGTGGGTAACCTACCTTATACAGGGGAATAACAGTTG 32576 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCC 141 |||| | ||||||||| |||| | ||||||| | | || | ||| | Sbjct 32577 GAAACGACTGCTAATACCGCATAAGCGCACGATGTCGCATGACATA-GTGTGAAAAGTTT 32635 Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201 ||||| | ||| |||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 32636 TTCGGTATAAGATGGACCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCCCACCAAGG 32695 Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| Sbjct 32696 CGACGATCAGTAGCCGACCTGAGAGGGTGACCGGCCACATTGGGACTGAGACACGGCCCA 32755 Query 262 AACTCCTACGGGAGGCAGCAGTGGGGAATATTG 294 ||||||||||||||||||||||||||||||||| Sbjct 32756 AACTCCTACGGGAGGCAGCAGTGGGGAATATTG 32788 >seq4660 Length=54038 Score = 251 bits (278), Expect = 2e-64 Identities = 362/501 (72%), Gaps = 26/501 (5%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGG-ATAACATAC 80 || ||||| | ||||| |||||||||| | ||| ||||| ||| | || |||| | Sbjct 4415 GACCGGCGAAAGGGTGCGTAACGCGTGAGCAACTTGCCC-GTATCCGGGGGATAAGCGAT 4357 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 |||| | ||||||| |||| | || |||||| || | |||||| Sbjct 4356 GGAAACGCCGTCTAATACCCCATAACA-ACAGAGGCCGCATGACCTTTGTTTGAAAGCTT 4298 Query 141 CGGCGG-TACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199 |||| | ||| |||||| | |||| ||||||| ||||| ||||||||| ||||| Sbjct 4297 CGGCAGATAC-GGATAGGCTCGCGAGACATTAGCTTGTTGGCGGGGTAACGGCCCACCAA 4239 Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259 ||| ||||| ||| | |||||||| | || |||||||||||||||||||||||| Sbjct 4238 GGCTACGATGTCTAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTC 4179 Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAG 319 ||||||||||||||||||||||||| ||||||||| |||||| | ||| |||| ||| Sbjct 4178 CAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGGAAGGCTGAACCAG 4119 Query 320 CAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGTAAA--GC-TCTGTCCTCAAGGAAG 375 | | |||||||| ||| |||| ||| |||||||||| || | ||| | || || Sbjct 4118 CCATGCCGCGTGCAGGATTAAGGCCCTATGGGTCGTAAACTGCTTTTGTGGTGGAGCAAT 4059 Query 376 A-----TA-----------ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419 | || |||| |||| | | || |||| ||||||||| |||||| Sbjct 4058 AAGACGTACGCGTACGTCGATGAGAGTACATCACGAATAAGCATCGGCTAACTCCGTGCC 3999 Query 420 AGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479 |||||||||||||||||| ||| || ||||||||||||| ||| | ||| |||||||| Sbjct 3998 AGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGT 3940 Query 480 GCGTAGGTGGTTTCTTAAGTC 500 ||||||| || | | ||||| Sbjct 3939 GCGTAGGCTGTCTGTCAAGTC 3919 >seq2219 Length=5028 Score = 248 bits (274), Expect = 3e-63 Identities = 224/282 (79%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 ||| ||||||||||||||||||||||| | |||||||||| | ||||| | Sbjct 284 GAGTGGCGGACGGGTGAGTAACGCGTGAGCAACCTGCCCTTAAGTGTGGGATAGTGTCTG 225 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCC 141 |||| | | |||||| ||||| ||| ||| |||| || ||| ||||| | Sbjct 224 GAAACGGACAGTAATACCGCATAATGTACGGATATGGCATCATAACCGTACCAAAGATTT 165 Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201 || | ||||| | | ||||||||||||| |||||||| ||||||||| ||||||| Sbjct 164 ATCGCTTAAGGATGGGCTCGCGTCTGATTAGATAGTTGGTGGGGTAACGGCCTACCAAGT 105 Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261 |||||||||||||||| |||||||| ||| |||||||||||| |||||||||||| ||| Sbjct 104 CGACGATCAGTAGCCGGACTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCA 45 Query 262 AACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 303 ||||||||||||||||||||||||||||||||||||||||| Sbjct 44 GACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 3 >seq4910 Length=11294 Score = 197 bits (218), Expect = 4e-48 Identities = 267/369 (72%), Gaps = 31/369 (8%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| | || ||| | || |||| ||||| ||||||| |||||||||| || Sbjct 2001 AGGAGCGGCCTGCGGCCCATCAGCTGGTTGGCGGTGTAACGGACCACCAAGGCGATGACG 1942 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 ||| ||| ||||||||||||| ||| |||||||| ||||||| |||| ||| ||||||| Sbjct 1941 GGTATCCGGCCTGAGAGGGTGAGCGGGCACATTGGGACTGAGATACGGCCCAGACTCCTA 1882 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||| ||||||| | ||||| || ||||| ||| | ||| |||||||| Sbjct 1881 CGGGAGGCAGCAGCTAAGAATATTCCGCAATGCGCGAAAGCGTGACGGAGCGACGCCGCG 1822 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAG--CTCTGTC-CTCAAGGAAGATAATGACGGT 386 || ||||||||||| ||| | | || || || | | |||| |||| || || Sbjct 1821 TGGACGATGAAGGCCGGAAGGTTGCAGAGTCCTTTGGCGACCGAGGA--ATAAGGAGGGG 1764 Query 387 A-----------CT----TGA--GGAGG--------AAGCCCCGGCTAACTACGTGCCAG 421 | || ||| | ||| |||| |||||||| |||||||||| Sbjct 1763 AGCGGAAAGCCCCTTTGGTGACTGTAGGTCGAGAACAAGCACCGGCTAATTACGTGCCAG 1704 Query 422 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGC 481 |||||||||||| ||||| || || |||||| | |||||||| | |||||||||||| Sbjct 1703 CAGCCGCGGTAACACGTAAGGTGCGAGCGTTGTTCGGAATTA-TTGGGCGTAAAGGGCAT 1645 Query 482 GTAGGTGGT 490 ||||| ||| Sbjct 1644 GTAGGCGGT 1636 >seq4374 Length=59948 Score = 170 bits (188), Expect = 6e-40 Identities = 237/326 (73%), Gaps = 21/326 (6%) Strand=Plus/Minus Query 184 GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTG 243 ||||||||| ||| | | |||| ||| | |||||||| | || ||||| || Sbjct 3966 GGTAACGGCCCACCTGGCCTTCGATGGATAGGGGTTCTGAGAGGAAGGTCCCCCACACTG 3907 Query 244 GAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 303 |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| Sbjct 3906 GAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGG 3847 Query 304 CAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGTAAAGCTC- 361 | |||||||| |||| | | ||||| | |||||||| ||| ||||| ||||| | | Sbjct 3846 CGCAAGCCTGAACCAGCCAAGTAGCGTGCGGGATGAAGGCCCTACGGGTTGTAAACCGCT 3787 Query 362 TGTCCTCAAGG---AAGATAATGACG-GT----ACTTG-AG---------GAGGAAGCCC 403 | | | | || ||| |||| || |||| || || ||| | Sbjct 3786 TTTGCGCGGGGATAAAGCGGGGGACGCGTCCCCCCTTGCAGGTACCGCGCGAATAAGGAC 3727 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||| | |||||||||||||||||||||||| | || | |||||||||||| ||| Sbjct 3726 CGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGAAGGTCCGGGCGTTATCCGGATTTA 3667 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGG 489 | ||| ||||||| ||| ||| || Sbjct 3666 -TTGGGTTTAAAGGGAGCGCAGGCGG 3642 >seq2332 Length=45074 Score = 159 bits (176), Expect = 1e-36 Identities = 209/283 (74%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAA-CATAC 80 || ||||||| ||||| |||||||||| | ||| ||||| | ||||| ||| Sbjct 44795 GACCGGCGGAAGGGTGCGTAACGCGTGAGCAACATGCCCGTCATTGGGGGATAGTCATTG 44854 Query 81 CGAAAGGTATGC-TAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCT 139 |||| | |||| |||||| |||| ||| | |||||| ||| | |||| | Sbjct 44855 -GAAACG-ATGCGTAATACCCCATAACC-ACTGAAGTTGCATGGCTTTAGTGTAAAAGTT 44911 Query 140 CCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199 ||||| | |||| | | ||||| |||||| ||||||| |||||||||| ||||| Sbjct 44912 ACGGCGATGACGGATTGGCTCGCGTGGCATTAGCCAGTTGGTGAGGTAACGGCCCACCAA 44971 Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259 || ||||| ||| | |||||||| || | ||||||||| |||||||||||| | Sbjct 44972 AGCTACGATGCCTAGGGGTTCTGAGAGGAAGACCCCCCACATTGGGACTGAGACACGGCC 45031 Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGG 302 ||||||||||||||||||||||||| ||||||||| |||||| Sbjct 45032 CAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGG 45074 >seq4681 Length=18840 Score = 152 bits (168), Expect = 2e-34 Identities = 202/274 (74%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGG-ATAACATAC 80 || ||||| | ||||| |||||||||| | ||| ||||| ||| | || |||| | Sbjct 18570 GACCGGCGAAAGGGTGCGTAACGCGTGAGCAACTTGCCC-GTATCCGGGGGATAAGCGAT 18628 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140 |||| | ||||||| |||| | || |||||| || | |||||| Sbjct 18629 GGAAACGCCGTCTAATACCCCATAACA-ACAGAGGCCGCATGACCTTTGTTTGAAAGCTT 18687 Query 141 CGGCGG-TACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAA 199 |||| | ||| |||||| | |||| ||||||| ||||| ||||||||| ||||| Sbjct 18688 CGGCAGATAC-GGATAGGCTCGCGAGACATTAGCTTGTTGGCGGGGTAACGGCCCACCAA 18746 Query 200 GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTC 259 ||| ||||| ||| | |||||||| | || |||||||||||||||||||||||| Sbjct 18747 GGCTACGATGTCTAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTC 18806 Query 260 CAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 ||||||||||||||||||||||||| |||||||| Sbjct 18807 CAAACTCCTACGGGAGGCAGCAGTGAGGAATATT 18840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497523637376