Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq4660 291 2e-76 seq4910 289 7e-76 seq4374 255 1e-65 >seq4660 Length=54038 Score = 291 bits (322), Expect = 2e-76 Identities = 305/399 (76%), Gaps = 10/399 (3%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| |||||||||||||||||||||||| ||| || ||||||||||| Sbjct 4020 AAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCG 3961 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| ||||||||||||||| || | | ||||||||||||||| | | Sbjct 3960 GATTTATTGGGTTTAAAGGGTGCGTAGGCTGTCTGTCAAGTCAGAGGTGAAATACCTGAG 3901 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 | ||| | || ||||| ||||| |||| |||| || | | | | | | ||||| Sbjct 3900 CCTAACTCAGGAACTGCCTTTGATACTGGCAGGCTGGAATACGGATGCCGTGGGAGGAAT 3841 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||||||||||||||||||| ||||||||| ||||||| | |||||||| || Sbjct 3840 GAGTAGTGTAGCGGTGAAATGCATAGATATTACTCAGAACACCGATTGCGAAGGCATCTC 3781 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 | | || | |||| ||||||| |||||||||||||| ||||||||||||||||||| Sbjct 3780 ACGAATCCGTCATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCC 3721 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA---AGTGCTCCGG 369 ||||||||||||| ||||||||||| |||| ||||| | ||| ||| ||| Sbjct 3720 TGGTAGTCCACGCAGTAAACGATGATAACTAACCGTCGGCG---ATACACAGT----CGG 3668 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | ||| || || |||||| ||||||||||||||| Sbjct 3667 TGGCCAAGCGAAAGCGATAAGTTATCCACCTGGGGAGTA 3629 >seq4910 Length=11294 Score = 289 bits (320), Expect = 7e-76 Identities = 305/397 (77%), Gaps = 7/397 (2%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||| |||||||||||||||||||||| ||||| || || |||||| | || Sbjct 1727 AAGCACCGGCTAATTACGTGCCAGCAGCCGCGGTAACACGTAAGGTGCGAGCGTTGTTCG 1668 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||| ||||||||||||| ||||| ||| |||||| | |||||| || Sbjct 1667 GAATTATTGGGCGTAAAGGGCATGTAGGCGGTCCGGTAAGTCGGGCGTGAAATCGCGGGG 1608 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG-GAGGGGCAAGTGGAA 191 | |||||||| | | || || ||||| || || |||| ||| |||| | | | |||| Sbjct 1607 CCCAACCCCGCG-CGGCGCCCGATACTGCTGGTCTTGAGT-CAGCGAGGCGGAGGCGGAA 1550 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 ||||| |||||| |||||||| |||||||| |||| ||||||| ||||||||||| || Sbjct 1549 TTCCTGGTGTAGGGGTGAAATCTGTAGATATCAGGAAGAACACCGGTGGCGAAGGCAGCC 1490 Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 | | | | |||||| |||||| |||| | | |||||||||||||||||||||||| Sbjct 1489 TCCGAGCGCATGACTGACGCTGAGGTGCGAAGGTGCGGGGAGCAAACAGGATTAGATACC 1430 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTG 371 |||||||||| | | |||||||||| ||| |||||| || | ||| | |||| Sbjct 1429 CTGGTAGTCCGCACAGTAAACGATGCGCACTTGGTGTCCGGCC----AAGAGGCTGGGTG 1374 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||||||||| |||||| || ||||||||||| Sbjct 1373 CCAAAGCAAACGCGATAAGTGCGCCGCCTGGGGAGTA 1337 >seq4374 Length=59948 Score = 255 bits (282), Expect = 1e-65 Identities = 297/394 (75%), Gaps = 9/394 (2%) Strand=Plus/Minus Query 18 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 77 |||||||| | |||||||||||||||||||||||| | || | |||||||||||| || Sbjct 3727 CCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGAAGGTCCGGGCGTTATCCGGATTT 3668 Query 78 ACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAA 137 | |||| ||||||| ||| ||| || | ||||||| |||||| | ||||||| Sbjct 3667 ATTGGGTTTAAAGGGAGCGCAGGCGGGAAGTCAAGTCAGCCGTGAAATGTCCCGGCTCAA 3608 Query 138 CCCCGGGAC-TGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCT 196 || ||| | ||| ||||||||| || | ||||| || |||| | |||| || | Sbjct 3607 CC--GGGTCATGCGGTTGAAACTGTCTTTCTTGGGTGCACAAGAGGCAGGCGGAACTCGT 3550 Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTG 256 ||||||||||||||||| ||||||| | || |||| || | |||||||| || ||| | Sbjct 3549 GGTGTAGCGGTGAAATGCATAGATATCACGATGAACCCCGATTGCGAAGGCAGCCTGCCG 3490 Query 257 GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 316 | ||| || ||| || | ||||||| ||| ||| | ||||||||||||||||||||||| Sbjct 3489 GGGTGTTACCGACGCTCATGCTCGAAGGCGCGGGTATCAAACAGGATTAGATACCCTGGT 3430 Query 317 AGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGC- 375 ||||| ||| |||||||||| || | | || | ||| | | ||| | | ||||| Sbjct 3429 AGTCCGCGCGGTAAACGATGGATGCCCGCGGT-GTGGC-CTTTTGTGGT--TGCGCCGCC 3374 Query 376 -AGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || || |||| || |||||||||||||| Sbjct 3373 AAGCGAAAGCGTTAAGCATCCCACCTGGGGAGTA 3340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203138648832