Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4234 425 2e-116 seq4374 394 3e-107 seq2436 313 8e-83 seq4660 311 3e-82 >seq4234 Length=168850 Score = 425 bits (470), Expect = 2e-116 Identities = 439/566 (78%), Gaps = 13/566 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC---AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 |||||| ||| |||||| |||| ||| | |||| ||||||| |||||||||| | Sbjct 87681 CGAGTCTGAAAGGGGCGAAGTGAGTCAGAGGGGGCAGACGCGAAACCGAGTGATCTACAC 87622 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||| ||||||||||| |||||||||| |||||||||| || | | |||||||| Sbjct 87621 ATGTCCAGGATGAAGTCCCGGTAACACGGGATGGAGGTCCGCACGGATAAGCGTTGAAAA 87562 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 | |||||| |||| ||||| ||||||||| || |||||| ||| |||||| || | Sbjct 87561 GCTTCCCGATGAGGTGTGTGTAGGAGTGAAAGGCCAATCAAACTCGGAGATAGCTCGTAC 87502 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGC-ACTGT 235 || |||||| |||||||| |||| | || || | | | |||||||| |||| Sbjct 87501 TCCCCGAAAGGCATTTAGGTGCCGCCTGGGATGTTTCTCT-TGTGAGGTAGAGCGACTGA 87443 Query 236 TATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 | ||| | | || | | | | || ||| | ||||||||||||||||| |||| Sbjct 87442 T-TGGATGCGAGGGCTTCACCGCCTATCAAGTCCAGACAAACTCCGAATGCGCAAGAGTT 87384 Query 296 TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | ||||| ||||| |||||||||||||||||||||||||||||||||||| || Sbjct 87383 AAGTC-CTGGAGTAAGGGCGCGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCAGA 87325 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | | | ||||||| ||||||||| ||||||||| ||||||| |||| | | |||| Sbjct 87324 CCACCGGCTAAGGTCCCGAAATGTATGCTAAGTTAGACTAACGCAGTCCGGCCCCCAAGA 87265 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 87264 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTCAAAGAGTGCGTAACAGCTCACTAG 87205 Query 476 TCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT- 534 |||||||| ||||||||||||||||||||||| ||| | ||||||| ||||||| Sbjct 87204 TCGAGGAGCTGGGCGTGGATAATAATCGGGTATAAAGCATATTGCCGAAGCCGTGGGATG 87145 Query 535 CATTTATATGATCGGTAGGGGAGCAT 560 || ||| |||||||||||||||| Sbjct 87144 CA---ATAGCATCGGTAGGGGAGCAT 87122 >seq4374 Length=59948 Score = 394 bits (436), Expect = 3e-107 Identities = 420/548 (77%), Gaps = 15/548 (3%) Strand=Plus/Minus Query 21 AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGT 80 |||| ||| | |||| ||||||| ||||||||||| || ||||| ||||| |||| Sbjct 1458 AGTCTGTGGCGGCAGACGCGAAACCGGGTGATCTACCCGTGCCCAGGCTGAAGTCCCGGT 1399 Query 81 AACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA 140 ||| || |||||| ||||||| | | |||||||| | ||||||| || ||||| Sbjct 1398 AACGCGGGATGGAGGGCCGAACCGATAAGCGTTGAAAAGCTTCCGGATGAGGTGCGGGTA 1339 Query 141 GGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 || ||||||||| || ||||| ||| |||||| || ||| ||||||| |||||||| Sbjct 1338 GGAGTGAAAGGCCAATCAAACCCGGAGATAGCTCGTACTCCCCGAAAAGCATTTAGGTGC 1279 Query 201 TGCCTCAAGTATCACCATCGGG-GGTAGAGC-ACTGTTATGGCTAGGGGGTCATTGCGAC 258 ||||| || | | || || |||||||| ||||| ||| | | || | | || | Sbjct 1278 TGCCTGTGGTGTTCCGCTCAGGAGGTAGAGCGACTGTC-TGGATGCGAGGGCTTCGCCGC 1220 Query 259 TTACCAAACCATTGCAAACTCCGAATGC----GCATCAGTTTTACCGCGGGAGTGAGGGC 314 || ||| | | |||||||||||||| || || | | |||| |||| Sbjct 1219 CTATCAAGTCCTGCCAAACTCCGAATGCCTGAGCGCCA-----AGCCATGGAGAAAGGGG 1165 Query 315 ATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGA 374 ||||||||| |||||| ||||||||||||||||||| ||| | | |||||||||||| Sbjct 1164 GCGGGTGCTAACGTCCGTTCCCGAGAGGAGAAGAATCCAGACCACCGTCTAAGGCCCCGA 1105 Query 375 AATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTG 434 | | ||||| ||||| |||||||||||| || ||| ||||||||| ||||||||||| Sbjct 1104 AGTCGCAGCTGAGTTAGGCTAACGAAGTCTCTTTCCTATGACAGCTAGCATGTTGGCTTG 1045 Query 435 GAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGA 494 |||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||| Sbjct 1044 GAAGCAGCCATTCATTCAAAGAGTGCGTAACAGCTCACTAGTCGAGGAATCAGGCATGGA 985 Query 495 TAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT--CATTTATATGATCGGTAG 552 ||||||||||||| |||| || ||||||| ||||||| | ||| | | |||||||| Sbjct 984 TAATAATCGGGTA-TAAGCTGCGCGCCGAAGCCGTGGGATGACTTTTTTGTCATCGGTAG 926 Query 553 GGGAGCAT 560 |||||||| Sbjct 925 GGGAGCAT 918 >seq2436 Length=67316 Score = 313 bits (346), Expect = 8e-83 Identities = 420/573 (73%), Gaps = 25/573 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC---AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 |||||| |||||||||| | |||| | || |||| ||||||| |||||||||||| Sbjct 671 CGAGTCTGAACAGGGCGCCGATAGTCACAAGGAACAGACGCGAAACCTAGTGATCTACCC 730 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||| ||||| ||||| ||||||||||||| |||||| ||||||| | |||||||| Sbjct 731 ATGACCAGGGTGAAGTGGCGGTAACACGCCATGGAGGCCCGAACCAGTTTCCGTTGAAAA 790 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||||||| |||||||||| ||||||||| || |||||| ||| |||||| || | Sbjct 791 GGGCTTGGATGAGTTGTGGGTAGGAGTGAAAGGCCAATCAAACTGGGAGATAGCTCGTAC 850 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGC-ACTGTTA 237 || |||||| | |||||| | ||||| || | | | |||| ||| |||| || Sbjct 851 TCCCCGAAATGTCTTTAGGGACAGCCTCGGACATGATTACGTGAGGTAAAGCTACTGATA 910 Query 238 TG--GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 | || ||| |||| | | | ||||| | | ||||||| |||||||| | || Sbjct 911 GGATGCGGGGGCTTCATCG---CCTGCCAAATCCTGACAAACTCTGAATGCGCGTAAGAC 967 Query 296 TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | |||||||||| ||||||||| ||||| ||| ||| |||| || || Sbjct 968 TGAGTCCGGGAGTGAGTCGTCGGGTGCTAATATCCGTCGGCGAAAGGGTAAGAGCCCAGA 1027 Query 356 CTATCAGCTAAGGCCCCGAAATGACAG-CTAAGTT-AAAC-TAACGAAGTCTGATTGCTA 412 | | |||| |||||||||||| || | |||||| | || ||||| || || || Sbjct 1028 CCAACAGCCAAGGCCCCGAAA-CACGGTTTAAGTTGAGACAGAACGAGGTGACATCGCAG 1086 Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 1087 TGACAGCTAGGATGTTAGCTTGGAAGCAGCTATTCATTCAAAGAGTGCGTAACAGCTCAC 1146 Query 473 TAGTCGA--GGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTG 530 ||||||| ||||| |||||||| || | |||| || ||| | ||||||| || Sbjct 1147 TAGTCGAGCGGAGT--TGCGTGGATGATGAGCGGGCATCAAGACCGTTGCCGAAGCTATG 1204 Query 531 GGAT---CATTTATATGATCGGTAGGGGAGCAT 560 |||| || | |||||||||||||||| Sbjct 1205 GGATGCGCA-----AGCATCGGTAGGGGAGCAT 1232 >seq4660 Length=54038 Score = 311 bits (344), Expect = 3e-82 Identities = 388/522 (74%), Gaps = 20/522 (4%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| |||||||||| |||| || | | |||| ||||||| ||||||||||||| Sbjct 2054 CGAGTCTGAACAGGGCGCTTGAGTCAGTGCGAGCAGACGCGAAACCTAGTGATCTACCCA 1995 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||||| | |||||| | ||||||| ||||||| | |||||||| Sbjct 1994 TGGCCAGGGTGAAGGTACCGTAACAGGTACTGGAGGCCCGAACCAGTTTCCGTTGAAAAG 1935 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 |||||||||||||||||| ||||||||| || |||||| ||| |||||| || || Sbjct 1934 GGCTTGGATGAGCTGTGGGTAGGAGTGAAAGGCCAATCAAACTGGGAGATAGCTCGTACT 1875 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGC-ACTGTTAT 238 | |||||| | |||||| | ||||| ||| | | |||||||| |||| || Sbjct 1874 CCCCGAAATGTCTTTAGGGACAGCCTCGGTTATGATTGCGTGAGGTAGAGCTACTGATAG 1815 Query 239 GGCTAGGGGG--TCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCA----TCA 292 | || ||| |||| || || | | | |||||||||||||||| ||| Sbjct 1814 GAAAAGAGGGCTTCATCGCC---TATCGATTTCTGACAAACTCCGAATGCGCGCAATTCA 1758 Query 293 GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCC 352 | || |||||||||| ||||||||| ||||| ||| ||| |||| || Sbjct 1757 GATTC----CGGGAGTGAGTCGTCGGGTGCTAATATCCGTCGGCGAAAGGGTAAGAGCCC 1702 Query 353 GGACTATCAGCTAAGGCCCCGAAATGACAGCT-AAGTTAA-ACTAA-CGAAGTCTGATTG 409 ||| ||||||||||||||||| | ||| | ||||| | || || |||||| | | Sbjct 1701 AGACCTTCAGCTAAGGCCCCGAAGAG-CAGTTTAAGTTGAGACGAAACGAAGTGACACCG 1643 Query 410 CTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCT 469 | ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||| Sbjct 1642 CCAAGACAGCTAGGATGTTAGCTTGGAAGCAGCTATTCATTCAAAGAGTGCGTAACAGCT 1583 Query 470 CACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAA 511 ||||||||||| || |||||||| || | |||| ||||| Sbjct 1582 CACTAGTCGAGCGGTGATGCGTGGATGATGACCGGGCATTAA 1541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689513847296