Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq4660 150 3e-34 seq4374 147 4e-33 seq4234 131 3e-28 seq4711 116 7e-24 seq2436 113 8e-23 seq4910 75.2 2e-11 >seq4660 Length=54038 Score = 150 bits (166), Expect = 3e-34 Identities = 184/247 (74%), Gaps = 17/247 (7%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC--AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 || |||||||||||| || | | |||| ||||||||| ||| ||||| ||||| || Sbjct 2698 GGAGGATGCCTTGGC--TTCCGAAAGCGAGGAAGGACGTGGTAAGCTGCGAAAAGCTCCG 2641 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||| ||||||| ||||||||| |||| ||||||||||| ||||| | ||| Sbjct 2640 GGGAACC-GCAAACAGGTTTTGATCCGGAGATATCCGAATGGGGTAACCCACACAGTTGA 2582 Query 128 -GTCATTGCATG--CTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCT 184 | | || || ||||| | || |||||||||| | |||||||||||||| Sbjct 2581 AGGCTGTGTATCGCCTGAA---------AGGCGAAGCGAACGCAGGGAACTGAAACATCT 2531 Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||| ||||||||||||||| ||| ||||||| ||||||||||| ||||| |||| Sbjct 2530 TAGTACCTGCAGGAAAAGAAAGAAACATCGATTCCCGGAGTAGTGGCGATCGAAACGGGA 2471 Query 245 TGAGCCT 251 |||||| Sbjct 2470 AGAGCCT 2464 >seq4374 Length=59948 Score = 147 bits (162), Expect = 4e-33 Identities = 188/256 (73%), Gaps = 15/256 (6%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || || ||||| |||||||| ||| | ||||||||||||||| | | ||||| | Sbjct 2143 AGGGCGCATGGCGGATGCCTAGGCTCTGGAAGGCGATGAAGGACGCGGCAAGCTGCGAAA 2084 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| |||||||| | ||| | ||||||||||| ||| ||||||||||| ||||| | Sbjct 2083 AGCCGCGGGGAG-GCGCATGCGGCCTTTGATCCGCGGATGTCCGAATGGGGCAACCCTCC 2025 Query 121 CCTTTGGGTCATTGCATGCTG--AATACATAGGTATGCAAAG----CGAACGCGGCGAAC 174 | | || | | || | ||| | || ||| | ||| ||||||||| |||| Sbjct 2024 C------GGCA--GGAGGCCGGGAATCCTTATGTAGGATAAGGAGGCGAACGCGGGGAAC 1973 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||||||||| |||| | ||||||| ||||| |||| | ||| ||| |||||||||||| Sbjct 1972 TGAAACATCTTAGTACCCGCAGGAAGAGAAAACAACAGTGATACCCCCAGTAGTGGCGAG 1913 Query 235 CGAAATGGGATGAGCC 250 |||| ||| ||||| Sbjct 1912 CGAACGGGGCGGAGCC 1897 >seq4234 Length=168850 Score = 131 bits (144), Expect = 3e-28 Identities = 180/245 (73%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||| |||||||| ||| | |||||||| ||||||||| || |||||||||||||| Sbjct 88330 ATGGCGGATGCCTAGGCTCTCACAGGCGAAGAAGGACGTGATAAGCTGCGATAAGCTGCG 88271 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC-CCTTTG 126 || || | ||||| || |||||||| |||||||||||||| ||||| | ||| Sbjct 88270 GGTAG-GTGCAAATGACCTATGATCCGCGGATTTCCGAATGGGACAACCCACCTACTTGA 88212 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAA 186 | | || | | || || ||| | |||||||||| |||||||||||||| | Sbjct 88211 AGAGTAGGTATCC--ATTATAT---GATG-GAGGCGAACGCGGGGAACTGAAACATCTTA 88158 Query 187 GTAGCTGCAGGAAAAG-AAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 ||| | | ||||| || |||| || ||||||| ||||||||||||||| |||| Sbjct 88157 GTACCCGTAGGAAGAGAAAATAAAGAATGATTCCCCCAGTAGTGGCGAGCGACCGGGGAA 88098 Query 246 GAGCC 250 ||||| Sbjct 88097 GAGCC 88093 >seq4711 Length=7849 Score = 116 bits (128), Expect = 7e-24 Identities = 158/216 (73%), Gaps = 17/216 (8%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC--AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 || |||||||||||| || | | |||| ||||||||| ||| ||||| ||||| || Sbjct 204 GGAGGATGCCTTGGC--TTCCGAAAGCGAGGAAGGACGTGGTAAGCTGCGAAAAGCTCCG 147 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG- 126 |||| ||||||| ||||||||| |||| ||||||||||| ||||| | ||| Sbjct 146 GGGAACC-GCAAACAGGTTTTGATCCGGAGATATCCGAATGGGGTAACCCACACAGTTGA 88 Query 127 GGTCATTGCAT--GCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCT 184 | | || || ||||| | || |||||||||| | |||||||||||||| Sbjct 87 AGGCTGTGTATCGCCTGAA---------AGGCGAAGCGAACGCAGGGAACTGAAACATCT 37 Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCC 220 |||| ||||||||||||||| ||| ||||||| Sbjct 36 TAGTACCTGCAGGAAAAGAAAGAAACATCGATTCCC 1 >seq2436 Length=67316 Score = 113 bits (124), Expect = 8e-23 Identities = 175/246 (71%), Gaps = 13/246 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTAC-AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 ||||||||||| ||| || |||||||||| ||||| ||| ||||| |||| |||| Sbjct 25 GGTGGATGCCTAGGCTATCCGGAGGCGATGAAAGACGTGGTAAGCTGCGAAAAGCCGCGG 84 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG-- 126 ||| | ||||||| ||||||||| ||| || |||||||| ||||| ||| Sbjct 85 GGATTT-GCAAACAGGAGTTGATCCGCGGATGTCTGAATGGGGCAACCCACTGGATTGAA 143 Query 127 GGTC-ATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 | || | | | ||| | || || |||||| ||| |||||||||||||| Sbjct 144 GATCCAGTACCATCTGTGAAGATGGG--------GCGAACCCGGGGAACTGAAACATCTT 195 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||| | | ||||| ||||| || ||| ||| ||||||||||||||||| ||| Sbjct 196 AGTACCCGGAGGAAGAGAAAGAAAAGTCGATACCCTGAGTAGTGGCGAGCGAAAGGGGCA 255 Query 246 GAGCCT 251 |||||| Sbjct 256 GAGCCT 261 >seq4910 Length=11294 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/83 (81%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 || ||| |||| |||||||||| | | |||||||||||||| |||||||| ||||| Sbjct 184 GGTGAAGTGAACCATCTAAGTAACC-CGGGAAAAGAAATCAAGAGAGATTCCGTGAGTAG 126 Query 228 TGGCGAGCGAAATGGGATGAGCC 250 ||||||||||| ||| ||||| Sbjct 125 CGGCGAGCGAAAGCGGAGGAGCC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918353170784