Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq4660 150 3e-34
seq4374 147 4e-33
seq4234 131 3e-28
seq4711 116 7e-24
seq2436 113 8e-23
seq4910 75.2 2e-11
>seq4660
Length=54038
Score = 150 bits (166), Expect = 3e-34
Identities = 184/247 (74%), Gaps = 17/247 (7%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTAC--AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
|| |||||||||||| || | | |||| ||||||||| ||| ||||| ||||| ||
Sbjct 2698 GGAGGATGCCTTGGC--TTCCGAAAGCGAGGAAGGACGTGGTAAGCTGCGAAAAGCTCCG 2641
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||| ||||||| ||||||||| |||| ||||||||||| ||||| | |||
Sbjct 2640 GGGAACC-GCAAACAGGTTTTGATCCGGAGATATCCGAATGGGGTAACCCACACAGTTGA 2582
Query 128 -GTCATTGCATG--CTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCT 184
| | || || ||||| | || |||||||||| | ||||||||||||||
Sbjct 2581 AGGCTGTGTATCGCCTGAA---------AGGCGAAGCGAACGCAGGGAACTGAAACATCT 2531
Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
|||| ||||||||||||||| ||| ||||||| ||||||||||| ||||| ||||
Sbjct 2530 TAGTACCTGCAGGAAAAGAAAGAAACATCGATTCCCGGAGTAGTGGCGATCGAAACGGGA 2471
Query 245 TGAGCCT 251
||||||
Sbjct 2470 AGAGCCT 2464
>seq4374
Length=59948
Score = 147 bits (162), Expect = 4e-33
Identities = 188/256 (73%), Gaps = 15/256 (6%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| || ||||| |||||||| ||| | ||||||||||||||| | | ||||| |
Sbjct 2143 AGGGCGCATGGCGGATGCCTAGGCTCTGGAAGGCGATGAAGGACGCGGCAAGCTGCGAAA 2084
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
||| |||||||| | ||| | ||||||||||| ||| ||||||||||| ||||| |
Sbjct 2083 AGCCGCGGGGAG-GCGCATGCGGCCTTTGATCCGCGGATGTCCGAATGGGGCAACCCTCC 2025
Query 121 CCTTTGGGTCATTGCATGCTG--AATACATAGGTATGCAAAG----CGAACGCGGCGAAC 174
| | || | | || | ||| | || ||| | ||| ||||||||| ||||
Sbjct 2024 C------GGCA--GGAGGCCGGGAATCCTTATGTAGGATAAGGAGGCGAACGCGGGGAAC 1973
Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234
|||||||||| |||| | ||||||| ||||| |||| | ||| ||| ||||||||||||
Sbjct 1972 TGAAACATCTTAGTACCCGCAGGAAGAGAAAACAACAGTGATACCCCCAGTAGTGGCGAG 1913
Query 235 CGAAATGGGATGAGCC 250
|||| ||| |||||
Sbjct 1912 CGAACGGGGCGGAGCC 1897
>seq4234
Length=168850
Score = 131 bits (144), Expect = 3e-28
Identities = 180/245 (73%), Gaps = 9/245 (4%)
Strand=Plus/Minus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
|||| |||||||| ||| | |||||||| ||||||||| || ||||||||||||||
Sbjct 88330 ATGGCGGATGCCTAGGCTCTCACAGGCGAAGAAGGACGTGATAAGCTGCGATAAGCTGCG 88271
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC-CCTTTG 126
|| || | ||||| || |||||||| |||||||||||||| ||||| | |||
Sbjct 88270 GGTAG-GTGCAAATGACCTATGATCCGCGGATTTCCGAATGGGACAACCCACCTACTTGA 88212
Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAA 186
| | || | | || || ||| | |||||||||| |||||||||||||| |
Sbjct 88211 AGAGTAGGTATCC--ATTATAT---GATG-GAGGCGAACGCGGGGAACTGAAACATCTTA 88158
Query 187 GTAGCTGCAGGAAAAG-AAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245
||| | | ||||| || |||| || ||||||| ||||||||||||||| ||||
Sbjct 88157 GTACCCGTAGGAAGAGAAAATAAAGAATGATTCCCCCAGTAGTGGCGAGCGACCGGGGAA 88098
Query 246 GAGCC 250
|||||
Sbjct 88097 GAGCC 88093
>seq4711
Length=7849
Score = 116 bits (128), Expect = 7e-24
Identities = 158/216 (73%), Gaps = 17/216 (8%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTAC--AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
|| |||||||||||| || | | |||| ||||||||| ||| ||||| ||||| ||
Sbjct 204 GGAGGATGCCTTGGC--TTCCGAAAGCGAGGAAGGACGTGGTAAGCTGCGAAAAGCTCCG 147
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG- 126
|||| ||||||| ||||||||| |||| ||||||||||| ||||| | |||
Sbjct 146 GGGAACC-GCAAACAGGTTTTGATCCGGAGATATCCGAATGGGGTAACCCACACAGTTGA 88
Query 127 GGTCATTGCAT--GCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCT 184
| | || || ||||| | || |||||||||| | ||||||||||||||
Sbjct 87 AGGCTGTGTATCGCCTGAA---------AGGCGAAGCGAACGCAGGGAACTGAAACATCT 37
Query 185 AAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCC 220
|||| ||||||||||||||| ||| |||||||
Sbjct 36 TAGTACCTGCAGGAAAAGAAAGAAACATCGATTCCC 1
>seq2436
Length=67316
Score = 113 bits (124), Expect = 8e-23
Identities = 175/246 (71%), Gaps = 13/246 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTAC-AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68
||||||||||| ||| || |||||||||| ||||| ||| ||||| |||| ||||
Sbjct 25 GGTGGATGCCTAGGCTATCCGGAGGCGATGAAAGACGTGGTAAGCTGCGAAAAGCCGCGG 84
Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG-- 126
||| | ||||||| ||||||||| ||| || |||||||| ||||| |||
Sbjct 85 GGATTT-GCAAACAGGAGTTGATCCGCGGATGTCTGAATGGGGCAACCCACTGGATTGAA 143
Query 127 GGTC-ATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185
| || | | | ||| | || || |||||| ||| ||||||||||||||
Sbjct 144 GATCCAGTACCATCTGTGAAGATGGG--------GCGAACCCGGGGAACTGAAACATCTT 195
Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245
|||| | | ||||| ||||| || ||| ||| ||||||||||||||||| |||
Sbjct 196 AGTACCCGGAGGAAGAGAAAGAAAAGTCGATACCCTGAGTAGTGGCGAGCGAAAGGGGCA 255
Query 246 GAGCCT 251
||||||
Sbjct 256 GAGCCT 261
>seq4910
Length=11294
Score = 75.2 bits (82), Expect = 2e-11
Identities = 67/83 (81%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227
|| ||| |||| |||||||||| | | |||||||||||||| |||||||| |||||
Sbjct 184 GGTGAAGTGAACCATCTAAGTAACC-CGGGAAAAGAAATCAAGAGAGATTCCGTGAGTAG 126
Query 228 TGGCGAGCGAAATGGGATGAGCC 250
||||||||||| ||| |||||
Sbjct 125 CGGCGAGCGAAAGCGGAGGAGCC 103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918353170784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |