Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2436 318 2e-84 seq4234 315 2e-83 seq4660 302 2e-79 seq4374 228 3e-57 >seq2436 Length=67316 Score = 318 bits (352), Expect = 2e-84 Identities = 414/568 (73%), Gaps = 32/568 (6%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||| ||||||||| | ||| ||| | ||||| | | ||||||| Sbjct 2342 TCGACTTGTGAGTCTCTCAGTCAAGCCCGCTTATGCCACTGCACTCTACGCGCGATTGCC 2283 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | || |||||| | ||||| || ||||||||||| ||| ||||| | ||| |||||| Sbjct 2282 ATCCGCGCTGAGCGGACCTTGGGAAGCCTCCGTTACGCTTTTGGAGG-CGACCACCCCAG 2224 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||||||||||| || ||||| || | | | |||||| || | Sbjct 2223 TCAAACTACCCACCAAGCGGTGTCCT---------TCTTACG---AAGTTAGA---CCCC 2179 Query 181 TACGGTCAGA---GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | |||| ||||||||||| ||| |||||||| |||||||| |||| ||| Sbjct 2178 GGGCGCCAGAAGGGTGGTATTTCACCAATGACTCCACGGGTACTAGCGTACCCGCCTCAC 2119 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 |||||||||||||||||||||| | | || || | |||||||||| ||||| Sbjct 2118 AGTCTCCCACCTATCCTACACATCTGACGTCCAAGATCAGCGCTAAGCTATAGTAAAGGT 2059 Query 298 CC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | |||||||||||||||| | ||| | | ||||||| || ||| |||||||| Sbjct 2058 TCACGGGGTCTTTTCGTCCCGTTGCGGGTAGGCGGCATCTTCACCGCCACTACAATTTCA 1999 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTT 415 ||| || ||| |||||||| | || ||||||| |||||||||||||||||||||| Sbjct 1998 CCGAGCTCATGGCTGAGACAGT-GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTT 1940 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct 1939 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAACGGGG 1880 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 |||| ||| || ||| || ||| | |||||||||||||| | Sbjct 1879 CTTCGATT----------CAGACCTTCGCTTGCGCTGAGCCCCCCTCTTAACCTTCCGTC 1830 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||| ||||| || ||| ||| Sbjct 1829 ACCGGGCAGGTGTCAGGCCACATATCTC 1802 >seq4234 Length=168850 Score = 315 bits (348), Expect = 2e-83 Identities = 411/558 (74%), Gaps = 32/558 (6%) Strand=Plus/Plus Query 14 CTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAGG 73 ||| ||||||||| ||||| ||| |||||||| | | || |||| | | ||||| Sbjct 85991 CTCCCAGTCAAGCACCCTTTTGCCATTACACTCTGACGCCGGTTACCAATCGGCGTGAGG 86050 Query 74 GAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCAC 133 | |||||| || ||||||||||| ||| ||||| | ||| ||||||| ||||||||||| Sbjct 86051 GTACCTTTAGGAGCCTCCGTTACGCTTTTGGAGG-CGACCACCCCAGTCAAACTACCCAC 86109 Query 134 CAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTG 193 || || | |||| | | || |||| |||| | ||| || | || || | Sbjct 86110 CAAGCGCGGTCCTT------GCTACTG---CAAG-TTAGG-ACCCAG-ACAGCCAAAGGG 86157 Query 194 --GTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTAT 251 ||||||||||| || ||||||| ||| |||| || |||| | |||| ||||| Sbjct 86158 CCGTATTTCAACAGCGGCTCCACACATACTGGCGTACATGCTTCATTGCCTCCGGCCTAT 86217 Query 252 CCTACACAAACCGCA--CCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308 |||||||| || | || || |||| | |||||||||| ||||| | ||||||||| Sbjct 86218 CCTACACAT--CGAATGCCCAAGTCCAACGCTAAGCTATAGTAAAGGTTCACGGGGTCTT 86275 Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368 ||||||| |||| | || ||||||| || |||| ||||||||| |||| || Sbjct 86276 TTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGGGCTCACGG 86335 Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 ||||||||| | || |||| ||||||||||||||||||||||||||||||||||| Sbjct 86336 TTGAGACAGTGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 86395 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCG 488 |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct 86396 TTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATT----- 86450 Query 489 CCTCACACACCACGTG-GTGTGC-TCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGC 546 || ||| || | || | | ||||||||||||||| |||||||||||| Sbjct 86451 -----CAGACCTTCTGCCTAAGCATAAGCCCTCCTCTTAACCTTCCGGCACCGGGCAGGT 86505 Query 547 GTCAGTCCGTATACCTCG 564 ||||| | ||||||| || Sbjct 86506 GTCAGACTGTATACCGCG 86523 >seq4660 Length=54038 Score = 302 bits (334), Expect = 2e-79 Identities = 405/557 (73%), Gaps = 25/557 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||| ||||||||| | ||| ||| | ||||| | | ||||||| Sbjct 378 TCGACTTGTTTGTCTCCCAGTCAAGCCCGCTTATGCCACTGCACTCTTCGCGCGATTGCC 437 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | || |||||| | ||||| || ||||||||||| ||| ||||| | ||| |||||| Sbjct 438 ATCCGCGCTGAGCGGACCTTGGGAAGCCTCCGTTACTCTTTTGGAGG-CGACCACCCCAG 496 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||||||||||| || ||||| | | ||| | |||| || | | | | Sbjct 497 TCAAACTACCCACCAAGCGGTGTCCATCTCTC-GATGTTAGGCCCCGG---GCGAGCAA- 551 Query 181 TACGGTCAGAGTGGTATTTCAACAA-CGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 || |||||||||||| ||||||||| | |||||||| |||| || || Sbjct 552 -------AGGGTGGTATTTCAATTGGCGACTCCACGAGAACTAGCGTTCCCGCTTCGCAG 604 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 |||||||||||| ||||||| | | | || ||| | |||||||||| ||||| | Sbjct 605 TCTCCCACCTATGCTACACATCACTCGTCCAAGACCAGCGCTAAGCTATAGTAAAGGTTC 664 Query 300 -CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||||||||||| | ||| | | ||||||| || ||| |||||||||| Sbjct 665 ACGGGGTCTTTTCGTCCCGTTGCGGGTAGGCGGCATCTTCACCGCCACTACAATTTCACC 724 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | || || |||||||| | ||||||| ||||||||||||||||||||||||| Sbjct 725 GAGCTCACGGCTGAGACAGTATCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACC 784 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| Sbjct 785 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAACGGGGCTT 844 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTG-CTCACGAGTCCTCTTAACCTTCCAGCAC 537 | || ||| || | || || | || | |||||||||||||| ||| Sbjct 845 CGAT--------TCAGAC-CTTCGGCTTGCGCCTAAGCCCCCCTCTTAACCTTCCGTCAC 895 Query 538 CGGGCAGGCGTCAGTCC 554 |||||||| ||||| || Sbjct 896 CGGGCAGGTGTCAGGCC 912 >seq4374 Length=59948 Score = 228 bits (252), Expect = 3e-57 Identities = 249/324 (77%), Gaps = 15/324 (5%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACC--GCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 |||| ||||||||||||| | || ||| | || | || ||||| ||| ||||| Sbjct 3 CTCCGGCCTATCCTACACATCCGATGC-CCGGACGC-AGCACTAAGCTGCAGTAAAGGTT 60 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||||||||| |||| | || ||||| | || |||| ||||||||| Sbjct 61 CACGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCATCACCGATACTACAATTTCAC 120 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 ||||| | ||||||||||| | || |||| |||||||||||||||||||||||| Sbjct 121 CGGGCTCGCGGTTGAGACAGTGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTTAC 180 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 181 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCT 240 Query 478 TCAATTACCCGCCTCACACACCACGTGGTG-TGCTCACGAGTCCTCTTAACCTTCCAGCA 536 |||| ||||||| | || || ||| | ||||||||||||||| ||| Sbjct 241 TCAA--------CTCACAC-CTTCGCCTTGCGGCTGAGCGCTCCTCTTAACCTTCCGGCA 291 Query 537 CCGGGCAGGCGTCAGTCCGTATAC 560 ||||||||| ||||| | |||||| Sbjct 292 CCGGGCAGGTGTCAGGCTGTATAC 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702313194624