Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq4374 334 2e-89 seq4660 295 1e-77 seq4681 197 3e-48 seq2332 185 2e-44 seq2219 138 2e-30 seq3891 131 4e-28 seq4910 105 1e-20 >seq4374 Length=59948 Score = 334 bits (370), Expect = 2e-89 Identities = 251/295 (85%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||| ||||||| | ||||||| ||||| | |||| || ||| Sbjct 3704 GGCTGCTGGCACGGAATTAGCCGGTCCTTATTCGCGCGGTACCTGCAAGGGGGGACGCGT 3763 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||||| ||| ||||| |||||||| |||||| ||||||||| ||||| Sbjct 3764 CCCCCGCTTTATCCCCGCGCAAAAGCGGTTTACAACCCGTAGGGCCTTCATCCCGCACGC 3823 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 |||||||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct 3824 TACTTGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 3883 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3884 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 3943 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 || |||| ||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 3944 CGAAGGCCAGGTGGGCCGTTACCCCGCCTGCAGCCTAATGGAACGCATCCCCATC 3998 >seq4660 Length=54038 Score = 295 bits (326), Expect = 1e-77 Identities = 236/283 (83%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | |||| || | || ||| Sbjct 3992 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCGTGATGTACTCTCATCGACGTACGCGT 4051 Query 61 GGAAGGTTTTATT---CCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCA 117 | || ||||| || | ||||| ||||||| | || ||| |||| ||||| || Sbjct 4052 ---ACGTCTTATTGCTCCACCACAAAAGCAGTTTACGACCCATAGGGCCTTAATCCTGCA 4108 Query 118 CGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCG 177 ||| | |||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 4109 CGCGGCATGGCTGGTTCAGCCTTCCGGCCATTGACCAATATTCCTCACTGCTGCCTCCCG 4168 Query 178 TAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATC 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4169 TAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTAGA 4228 Query 238 CATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATG 280 |||||||| || ||||||||||||||||||| || | |||||| Sbjct 4229 CATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAATG 4271 >seq4681 Length=18840 Score = 197 bits (218), Expect = 3e-48 Identities = 120/127 (94%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18840 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 18781 Query 214 GACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTA 273 |||||||||||||||||||||| |||||||| || ||||||||||||||||||| || | Sbjct 18780 GACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAA 18721 Query 274 CCTAATG 280 |||||| Sbjct 18720 GCTAATG 18714 >seq2332 Length=45074 Score = 185 bits (204), Expect = 2e-44 Identities = 126/142 (89%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 45074 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCC 45015 Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264 |||||||||| ||||||||||||||||||| |||||||| | |||||||||||||| Sbjct 45014 AATGTGGGGGGTCTTCCTCTCAGAACCCCTAGGCATCGTAGCTTTGGTGGGCCGTTACCT 44955 Query 265 CGCCTACTACCTAATGGAACGC 286 | || ||| |||||| |||| Sbjct 44954 CACCAACTGGCTAATGCCACGC 44933 >seq2219 Length=5028 Score = 138 bits (152), Expect = 2e-30 Identities = 132/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct 4 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 63 Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264 ||||||| | | |||||||| | ||| ||||| | || ||| ||||||||||| Sbjct 64 AATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTAGGCCGTTACCC 123 Query 265 CGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 | || |||| ||||| |||| |||||| | | |||| ||||||| Sbjct 124 CACCAACTATCTAATCAGACGCGAGCCCATCCTTAAGCGATAAATCTTT 172 >seq3891 Length=32788 Score = 131 bits (144), Expect = 4e-28 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 153 CAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGG 212 ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 32788 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGC 32729 Query 213 GGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACT 272 | | |||||||| | ||| ||||| | || |||||||||||||| | || ||| Sbjct 32728 CGGTCACCCTCTCAGGTCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACT 32669 Query 273 ACCTAATGGAACGCATCCCCATCGTACACCGA 304 | ||||| |||| ||||| || ||||| Sbjct 32668 AGCTAATCAGACGCGGGTCCATCTTATACCGA 32637 >seq4910 Length=11294 Score = 105 bits (116), Expect = 1e-20 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 |||||||| | ||||| | | ||| ||| || ||| ||||| ||||||| | Sbjct 1809 CCTTCATCGTCCACGCGGCGTCGCTCCGTCACGCTTTCGCGCATTGCGGAATATTCTTAG 1868 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||||||||||||||| ||| |||| ||||||| |||||||| | | ||||| Sbjct 1869 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGCCCGCTCACCCTCT 1928 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | || || || | | || ||||| ||||||| ||||| || | || |||| | Sbjct 1929 CAGGCCGGATACCCGTCATCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTGATGGGCC 1988 Query 285 GCA 287 ||| Sbjct 1989 GCA 1991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068745501888