Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20]
5,099 sequences; 74,234,735 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq4374 334 2e-89
seq4660 295 1e-77
seq4681 197 3e-48
seq2332 185 2e-44
seq2219 138 2e-30
seq3891 131 4e-28
seq4910 105 1e-20
>seq4374
Length=59948
Score = 334 bits (370), Expect = 2e-89
Identities = 251/295 (85%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||||| ||||||| | ||||||| ||||| | |||| || |||
Sbjct 3704 GGCTGCTGGCACGGAATTAGCCGGTCCTTATTCGCGCGGTACCTGCAAGGGGGGACGCGT 3763
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| ||||| ||| ||||| |||||||| |||||| ||||||||| |||||
Sbjct 3764 CCCCCGCTTTATCCCCGCGCAAAAGCGGTTTACAACCCGTAGGGCCTTCATCCCGCACGC 3823
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
|||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 3824 TACTTGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 3883
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3884 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 3943
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295
|| |||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 3944 CGAAGGCCAGGTGGGCCGTTACCCCGCCTGCAGCCTAATGGAACGCATCCCCATC 3998
>seq4660
Length=54038
Score = 295 bits (326), Expect = 1e-77
Identities = 236/283 (83%), Gaps = 6/283 (2%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||||||||||||||||||||||| | | |||| || | || |||
Sbjct 3992 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCGTGATGTACTCTCATCGACGTACGCGT 4051
Query 61 GGAAGGTTTTATT---CCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCA 117
| || ||||| || | ||||| ||||||| | || ||| |||| ||||| ||
Sbjct 4052 ---ACGTCTTATTGCTCCACCACAAAAGCAGTTTACGACCCATAGGGCCTTAATCCTGCA 4108
Query 118 CGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCG 177
||| | |||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 4109 CGCGGCATGGCTGGTTCAGCCTTCCGGCCATTGACCAATATTCCTCACTGCTGCCTCCCG 4168
Query 178 TAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4169 TAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTAGA 4228
Query 238 CATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATG 280
|||||||| || ||||||||||||||||||| || | ||||||
Sbjct 4229 CATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAATG 4271
>seq4681
Length=18840
Score = 197 bits (218), Expect = 3e-48
Identities = 120/127 (94%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18840 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 18781
Query 214 GACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTA 273
|||||||||||||||||||||| |||||||| || ||||||||||||||||||| || |
Sbjct 18780 GACCTTCCTCTCAGAACCCCTAGACATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAA 18721
Query 274 CCTAATG 280
||||||
Sbjct 18720 GCTAATG 18714
>seq2332
Length=45074
Score = 185 bits (204), Expect = 2e-44
Identities = 126/142 (89%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 45074 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCC 45015
Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264
|||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 45014 AATGTGGGGGGTCTTCCTCTCAGAACCCCTAGGCATCGTAGCTTTGGTGGGCCGTTACCT 44955
Query 265 CGCCTACTACCTAATGGAACGC 286
| || ||| |||||| ||||
Sbjct 44954 CACCAACTGGCTAATGCCACGC 44933
>seq2219
Length=5028
Score = 138 bits (152), Expect = 2e-30
Identities = 132/169 (78%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204
|||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 4 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 63
Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264
||||||| | | |||||||| | ||| ||||| | || ||| |||||||||||
Sbjct 64 AATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTAGGCCGTTACCC 123
Query 265 CGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313
| || |||| ||||| |||| |||||| | | |||| |||||||
Sbjct 124 CACCAACTATCTAATCAGACGCGAGCCCATCCTTAAGCGATAAATCTTT 172
>seq3891
Length=32788
Score = 131 bits (144), Expect = 4e-28
Identities = 120/152 (79%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 153 CAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGG 212
||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 32788 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGC 32729
Query 213 GGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACT 272
| | |||||||| | ||| ||||| | || |||||||||||||| | || |||
Sbjct 32728 CGGTCACCCTCTCAGGTCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACT 32669
Query 273 ACCTAATGGAACGCATCCCCATCGTACACCGA 304
| ||||| |||| ||||| || |||||
Sbjct 32668 AGCTAATCAGACGCGGGTCCATCTTATACCGA 32637
>seq4910
Length=11294
Score = 105 bits (116), Expect = 1e-20
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
|||||||| | ||||| | | ||| ||| || ||| ||||| ||||||| |
Sbjct 1809 CCTTCATCGTCCACGCGGCGTCGCTCCGTCACGCTTTCGCGCATTGCGGAATATTCTTAG 1868
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||||||||||||||| ||| |||| ||||||| |||||||| | | |||||
Sbjct 1869 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGCCCGCTCACCCTCT 1928
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | || || || | | || ||||| ||||||| ||||| || | || |||| |
Sbjct 1929 CAGGCCGGATACCCGTCATCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTGATGGGCC 1988
Query 285 GCA 287
|||
Sbjct 1989 GCA 1991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068745501888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |