Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alces_20americanus_20[genbank_20GCA_5F900089705.1_202017-06-20] 5,099 sequences; 74,234,735 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq4233 134 2e-26 seq3781 118 1e-21 seq1990 102 1e-16 seq4374 91.5 2e-13 >seq4233 Length=173878 Score = 134 bits (148), Expect = 2e-26 Identities = 352/534 (66%), Gaps = 5/534 (1%) Strand=Plus/Minus Query 162310 CCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCT 162369 || || || ||||||||||| | || || || || || ||||| || || || ||| Sbjct 70732 CCCGACGAGATATATAACCTTGCTGCACAAAGCCATGTGAAGGTCTCCTTCGACGTGCCG 70673 Query 162370 GAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTT 162429 || | ||||| | | || ||| | ||| || | || | |||||||| || || Sbjct 70672 GAGTTTACAGCCGATGCTGATGCAATCGGCGTGCTGCGCCTGTTGGAAGCCGTGCGCATT 70613 Query 162430 CTTGGTATGGAATCATACGT-AAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCT 162488 || ||| | || |||| || || || || || ||| || ||| | || || || Sbjct 70612 GCAGGCCTGGCA-CAGACGTGCAGGATTTATCAGGCATCCACAAGCGAGTTGTACGGACT 70554 Query 162489 AGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGT 162548 || || ||| || ||||| || || || || | || || || ||| || || || Sbjct 70553 GGTGCAAGAGGTTCCGCAGAAGGAGACAACCCCCTTCTACCCGCGTAGCCCATACGGTGT 70494 Query 162549 TGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGC 162608 || || || ||||| |||||||| || || ||||| | || ||||| |||| || Sbjct 70493 GGCAAAGCTCTATGGCTTCTGGATTATAAAGAACTATCGCGAGAGCTACAACATGTATTG 70434 Query 162609 CTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACG 162668 || | ||| || || ||||| || || ||| |||| |||| ||||| |||||||| || Sbjct 70433 CTGCAACGGCATCCTCTTCAACCATGAGAGCGAACGCCGAGGCGAGACATTCGTCACCCG 70374 Query 162669 CAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGG 162728 |||||| | ||| | || ||| | |||| | || | || | | || Sbjct 70373 CAAGATAACGCTGGCCGCTGCACGCATTGCTCAGGGATTTCAGGACAAACTGTATTTGGG 70314 Query 162729 AAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTT 162788 ||||||||| | ||||||||||| | || || || ||||| ||| |||||| | Sbjct 70313 CAACCTCAATAGCTTGCGTGACTGGGGTTATGCAAAGGATTACGTGGAGTGCATGTGGCT 70254 Query 162789 GATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAGCAGTA 162842 || |||||||| || |||| || || | || || || || || |||||| Sbjct 70253 CATCCTTCAGCAGCAGCAGCCCGAGGACTTCGTCATTGCCACAGG---GCAGTA 70203 >seq3781 Length=31116 Score = 118 bits (130), Expect = 1e-21 Identities = 350/535 (65%), Gaps = 6/535 (1%) Strand=Plus/Minus Query 162305 TTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATC 162364 |||| || || || || || ||||| | || ||||| ||||| ||||| || || ||| Sbjct 17577 TTCAGCCCGACGAGATCTACAACCTGGCAGCACAGAGCCACGTCAAGGTGTCGTTCGATG 17518 Query 162365 AGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCC 162424 ||| || | |||||| | | || || | ||| || | |||| || || || | Sbjct 17517 TGCCCGAGTTCACAGCCGAAGCTGATGCGCTCGGCGTGCTGCGACTGCTGGAGGCTGTGC 17458 Query 162425 GTCTTCTTGGTATGGAATCATACGTAA-GAATCTACCAAGCGAGCACCAGTGAGCTTTAT 162483 | || || ||| || |||| | ||||| || || || || || | Sbjct 17457 GCATTGCAGGGCTGGCG-CAGACGTGCCGCATCTATCAGGCTTCAACGTCGGAACTCTTC 17399 Query 162484 GGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTAT 162543 || || || ||||| || ||| || || || || | || || || || || || Sbjct 17398 GGACTCGTGCAGGAAGTGCCGCAGCGCGAGACTACGCCTTTCTACCCGCGTTCGCCCTAC 17339 Query 162544 GGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATA 162603 || || || || || ||||| || ||||| || || |||||| | || ||||||| || Sbjct 17338 GGCGTCGCCAAGCTCTATGGTTTTTGGATTATGAAGAACTACCGCGAGAGCTATGGTATG 17279 Query 162604 CATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTC 162663 | || | ||| || || ||||| ||||| ||| ||| | || |||||||||||| Sbjct 17278 TACTGCTGCAACGGCATCCTCTTCAACCACGAGAGCGAACGGCGCGGCGAGACGTTCGTC 17219 Query 162664 ACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCA--AAGTGATCTAC 162721 ||||| ||||| || || | || || | ||| |||| | | ||||| Sbjct 17218 ACACGTAAGATAACCCTCGCGGCCGCTCGCATAGCTCAGGGCTTCCAGGACAAGCTCTAC 17159 Query 162722 AACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTA 162781 || || |||||||| || | || |||||||| ||||||| || ||||| ||| | Sbjct 17158 --CTCGGCAACCTCAACGCGCTGCGCGACTGGGGCTACGCCAAGGATTACGTCGAGTGCA 17101 Query 162782 TGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGA 162836 ||||| | || || ||||| ||| |||| || || | || || || || || || Sbjct 17100 TGTGGCTCATTCTACAGCAGGAGCAGCCCGAAGACTTCGTCATAGCCACAGGCGA 17046 >seq1990 Length=13084 Score = 102 bits (112), Expect = 1e-16 Identities = 264/400 (66%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 162451 AGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAA 162510 |||||||| ||||| ||||| |||||||||||| || |||| || |||| Sbjct 10275 AGAATCTATCAAGCCAGCACATCTGAGCTTTATGGCAGGGTGGAGGAAGTGCCACAGAGT 10216 Query 162511 GAAACCACTCCAATGTATCCACGAT-CCCCTTATGGAGTTGCTAAACTATATGGGTTCTG 162569 |||||||| || | |||| | || ||| |||| || |||||||| |||||||| || Sbjct 10215 GAAACCACCCCGTTCCATCC-CTATAGCCCCTATGCGGTGGCTAAACTCTATGGGTTTTG 10157 Query 162570 GATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAA 162629 |||| | || | ||| | || || |||| | || | ||| ||||| ||||| Sbjct 10156 GATCGTTAAGGAATACCGTGAGGCATACAACATGTTTTGCTGTTCCGGCATTCTTTTCAA 10097 Query 162630 TCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTC 162689 ||| || ||| ||| || || || || ||||| ||||| |||||| | || | Sbjct 10096 TCATGAGAGCGAACGAAGGGGGGAAACATTCGTAACACGTAAGATCACTCTTGCAGCCGC 10037 Query 162690 CCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGA 162749 ||||| ||| ||| | || | || || ||| | || ||||| Sbjct 10036 ACGAATAGCACAAGGAAAACAAGACAAGCTGTATCTAGGCAACTTGTCGAGCCTTCGTGA 9977 Query 162750 CTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCC 162809 |||||| | || || |||||||| || ||||||| ||||||| ||| | | || || Sbjct 9976 CTGGGGCTATGCAAAGGACTACGTGGAATGTATGTGGATGATGCTGCAGAACAAAAAACC 9917 Query 162810 AGATGATTATGTGATCGCAACTGGTGAGCAGTATTCTGTA 162849 || |||| || || || || || | ||| |||| ||| Sbjct 9916 GGAAGATTTCGTCATTGCTACCGGAGTGCAACATTCCGTA 9877 >seq4374 Length=59948 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 |||| |||||||||| ||| |||||| ||||||||||||||||| ||| ||||||||| Sbjct 2401 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCGACGGTTCGAA 2342 Query 142852 TCCGTTATTCTCCAC 142866 ||||| ||||||||| Sbjct 2341 TCCGTCATTCTCCAC 2327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691415128119240