Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq70590 107 3e-21 seq45446 104 4e-20 seq69891 89.7 8e-16 >seq70590 Length=429005 Score = 107 bits (118), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96 |||| | | |||||| |||||| ||||||| | | || ||||||||| |||||| Sbjct 278575 TGACCCACACTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAATCCCTGATCCCC 278633 Query 97 ATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGA 155 ||||||| ||||| | ||||| | ||||| |||| ||| | || || ||| Sbjct 278634 ATCACGAATGGGGTTCAACGGGTTACCTGCACCTGCCGGCGCAGGGTAGGCACACGGTGA 278693 Query 156 ATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 |||||||||| ||||||| |||| | ||||||||||||||| |||||||||||| Sbjct 278694 GCCAGTCAGTGTAGCACGCGTGCAGCCCCGGACATCTAAGGGCATCTTAGACCTGTTATT 278753 Query 216 GCCTCAAACTTCCGTGGC 233 | ||||| || ||||| Sbjct 278754 G-CTCAATCTCAGGTGGC 278770 >seq45446 Length=1454406 Score = 104 bits (114), Expect = 4e-20 Identities = 169/235 (72%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || |||| ||||| ||||| || |||||| |||||| | Sbjct 805216 GTACAAAAGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGTACTTACTGGGAATT-C 805163 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || || ||||||| ||| ||||||| | ||||| | || Sbjct 805162 CTCGTTCATGGGGAATAACTGCAATGCCTGATCGCCATCACTAATGGGGTTCAATGGGTT 805103 Query 120 ACCCGGACCTGTCGGC-CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| |||| | || | |||| | || | ||| ||||||||| ||| |||| Sbjct 805102 ACCCACGCCTGCCAGCACCAGGT-AGGCACATGCTGAGCCAGTCAGTGTAGTGCGTGTGC 805044 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | ||||||||||||| ||||||||||||||| ||||| || ||||| Sbjct 805043 AGCCCCGGACATCTAAGGGCACTACAGACCTGTTATTG-CTCAATCTCGGGTGGC 804990 >seq69891 Length=1360345 Score = 89.7 bits (98), Expect = 8e-16 Identities = 133/182 (73%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 1052534 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGAC-CGCACTTACTGGGAA-TTC 1052478 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCA-CGATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | || ||||||| | ||| || | | || Sbjct 1052477 CTCGTTCATGGGGAATAATTGCAATCCCCGAT-CCCATCACCAATGGGGTTCAACGGGTT 1052419 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||| ||| | || || ||| ||||||||||||| |||| Sbjct 1052418 ACCCGCGCCTGCCGGAGTAGGCTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGAGTGCA 1052359 Query 180 GC 181 || Sbjct 1052358 GC 1052357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751436723800